Associate Professor in Genetics
| h-index: | 22 (Scopus citations; accessed September 2024) |
| 26 (Google Scholar citations; accessed September 2024) |
| □ | Animal Genomics and Bioresource Research Center (AGB Research Center), Faculty of Science, Kasetsart University, Bangkok, Thailand |
| □ |
Laboratory of Animal Cytogenetics & Comparative Genomics (ACCG)
Department of Genetics, Faculty of Science, Kasetsart University, Thailand |
| □ | Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, Bangkok, Thailand |
| Tel. | : +6625625555 Ext. 646260 |
| : kornsorn.s@ku.ac.th, ksrikulnath@yahoo.com |
|
| Website |
: www.agb-ku.com |
| ORCID ID | : orcid.org/0000-0002-5985-7258 |
COURSES
| ◌ | Introduction to Cytogenetics |
| ◌ | Cytogenetics |
| ◌ | Principle of Genetics |
| ◌ | Laboratory in Genetics |
| ◌ | Intensive Genetics |
| ◌ | Research Technique in Genetics |
POSITION
| ◌ | Associate Professor (Kasetsart University, Thailand) |
| ◌ | Deputy Dean for Special Affairs, Faculty of Science, Kasetsart University |
| ◌ | National Subcommittee of Bio-Circular-Green Economy (BCG Model) in the Field of Biodiversity |
| ◌ | Vice President of Genetics Society of Thailand |
| ◌ |
Chair of Operation Committee of AGB Research Unit, Kasetsart University
|
| ◌ | Academic Council for Phra Nakhon Si Ayutthaya Rajabhat University |
| ◌ |
Ethical Committee on the Conduct of Animals for Scientific Work at National Research Council of Thailand (NRCT)
|
| ◌ |
Institutional Animal Care and Use Committee for Faculty of Science, Kasetsart University
|
| ◌ |
Visiting Associate Professor, Amphibian Research Center, Hiroshima University, Japan
|
| ◌ | Guest Editor: GENES (special issue: Functional Sex Chromosome Evolution) |
| ◌ | Guest Editor: SUSTAINABILITY (special issue: Biodiversity in Different Regions: Exploring Global Ecology Sustainability) |
| ◌ | Editorial Board: Genes and Genomics (section Phylogenomics, Conservation Genetics, Diversity) |
| ◌ | Editorial Board: Genomics and Informatics |
| ◌ | Editorial Board: Frontier in Genetics |
| ◌ | Editorial Board: Cytogenetics and Genome Research |
| ◌ | International Steering Committee of Asian Chromosome Colloquium |
| ◌ | Advisory board of Thai Crocodile Farm Association (TCFA) |
| ◌ | BHBD (Open Biodiversity and Health Big Data Initiative) Regular Members, an association of the Alliance of International Science Organizations (ANSO) |
EDUCATION
| 2018 | Endeavour Postdoctoral Fellow (Reptile Genomics) |
| University of Canberra, Australia | |
| 2014 | Visiting Postdoctoral Fellow (Birds Cytogenetics) |
| University of Kent, UK | |
| 2012 | Postdoctoral Fellow (Reptile Cytogenetics) |
| Nagoya University, Japan | |
| 2010 | Ph.D. (Genetics) |
| Kasetsart University, Thailand | |
| 2005 | B.SC. (Biology), 1st honor |
| Kasetsart University, Thailand |
EMPLOYMENT HISTORY
| 2020 - present |
Visiting Associate Professor, Amphibian Research Center, Hiroshima University, Japan |
| 2019 – present | Associate Professor, Kasetsart University, Thailand |
| 2018 (6 months) | Endeavour Postdoctoral Fellow, University of Canberra, Australia |
| 2014 – 2019 | Assistant Professor, Kasetsart University, Thailand |
| 2011 – 2012 | Postdoctoral Fellow, Nagoya University, Japan |
| 2010 – 2013 | Lecturer, Kasetsart University, Thailand |
AWARDS
| 2023 |
รางวัลนักวิจัยดีเด่นแห่งชาติประจำปี 2566 สาขาเกษตรศาสตร์และชีววิทยา |
| 2022 |
National Outstanding Researcher 2022 (Agriculture and Biology) from National Research Council of Thailand (NRCT) |
| 2021 |
Impact Research Award from Kasetsart University, Thailand |
| 2020 |
Outstanding Academic Personnel in Research Science Under 40 years from Kasetsart University, Thailand |
| 2018 | TWAS Prize for Young Scientists in Thailand, National Research Council of Thailand, Thailand |
| 2016 | Innovative Scientist of the year Award-2015 for outstanding achievement in the field of Reptile Cytogenetics from the Executive Council of SARC (Scientific and Applied Research Center Meerut (U.P.) India |
| 2014 | Visiting staff under Lotus Unlimited Project, EU-Asian Mobility (Avian Comparative Genomics) at Prof. Darren Griffin’s lab, University of Kent, UK |
| 2014 | KU Research Star 2013 (Biological Science) |
RESEARCH INTERESTS
Kornsorn Srikulnath's research ambitiously intersects the realms of Animal Genomics and Comparative Genomics, with a keen focus on advancing Sustainable Food Security. His work diligently explores Agrobiodiversity and Conservation, shedding light on the pivotal role of Indigenous Genetic Resources in achieving Zero Hunger. His innovative approach in Nurturing Sustainability contributes significantly to Agrobiodiversity Conservation. Prof. Srikulnath's cutting-edge research not only deepens scientific understanding but also serves as a cornerstone for future breakthroughs in these critical areas, aligning closely with global objectives for sustainable development and food security. His work, therefore, represents a major stride towards a more resilient and equitable future in both agricultural and environmental sectors.
1. Cultivating a Resilient Future: Leveraging Animal Genetic Resources for Smart Agriculture and Sustainable Food Production
"Cultivating a Resilient Future," brilliantly merges animal genomics with sustainable agriculture, fostering smart food production techniques. His work illuminates the path for resilient agricultural practices, leveraging genetic diversity to enhance food security. This groundbreaking approach promises to revolutionize food systems, aligning with global sustainability goals and paving the way for a future where agriculture thrives in harmony with nature. Prof. Srikulnath's vision is a beacon in the quest for a sustainable and nourished world.
2. Powering Supply Chains: Enhancing Indigenous Genetic Resources for High-Value Species like Chickens and Catfish, Tailored for Thriving in Tropical Climates and Heat Stress Conditions
"Powering Supply Chains," innovatively focuses on enhancing the genetic resources of high-value species like chickens and catfish. His research is tailored to optimize these species for tropical climates and heat stress conditions. By harnessing indigenous genetic diversity, Prof. Srikulnath aims to strengthen supply chains and boost productivity, ensuring species resilience and sustainability. This pioneering work promises significant advancements in agricultural practices, particularly in tropical regions, marking a substantial step forward in global food security and sustainable farming in challenging environments.
3. Igniting S-Curve Agricultural Growth: Utilizing Indigenous Bioresources to Drive Innovative Agricultural Industry and Foster Rural Development through Cutting-Edge Science and Technology
"Igniting S-Curve Agricultural Growth," is a trailblazing venture into utilizing indigenous bioresources to revolutionize the agricultural industry. His focus on integrating cutting-edge science and technology aims to stimulate innovative agricultural practices and foster rural development. This project not only aligns with the aspirations of modern agriculture but also marks a significant leap towards sustainable rural progress, blending traditional knowledge with advanced scientific breakthroughs to catalyze an era of growth and prosperity in agriculture. Prof. Srikulnath's work is a key driver in shaping a resilient and technologically advanced agricultural future.
4. Genomics in Wildlife Conservation: Pioneering Biodiversity Preservation through Genomic Science
"Wildlife Conservation and Genomics" is a pioneering effort at the intersection of biodiversity preservation and genetic science. His approach harnesses the power of genomics to understand and protect wildlife, offering groundbreaking insights into species conservation. This work not only contributes to safeguarding endangered species but also enhances our understanding of ecological balance and evolution. Dr. Srikulnath's research is a crucial step towards a sustainable coexistence with nature, blending technological innovation with a commitment to conserving the rich tapestry of life on our planet.
5. Revolutionizing Aquaculture and Livestock through Genomic Innovation and Comparative Studies
Prof. Kornsorn Srikulnath's research uniquely blends genome projects and comparative genomics in transforming livestock, fishery, and aquaculture sectors. Focusing on genetic enhancement and sustainable practices, his work offers innovative solutions for breeding, disease resistance, and productivity. Prof. Srikulnath's approach not only enhances food security but also maintains ecological balance, positioning him as a pivotal figure in the sustainable evolution of these critical industries. His visionary research is driving a new era of agricultural innovation, marked by scientific excellence and a deep commitment to environmental stewardship.
RESEARCH FUNDINGS
- KURDI fund (Kasetsart University Research and Development Institute), Thailand
- NRCT fund (National Research Council of Thailand), Thailand
- e-Asia Joint Research Program (By collaboration between NSTDA and JST)
- National Science and Technology Development Agency (NSTDA), Thailand
- Development, Research and Innovation (PMU-B)
PUBLICATIONS
2021
Nguyen, Dung Ho My; Ponjarat, Jatupong; Laopichienpong, Nararat; Kraichak, Ekaphan; Panthum, Thitipong; Singchat, Worapong; Ahmad, Syed Farhan; Muangmai, Narongrit; Duengkae, Prateep; Peyachoknagul, Surin; Ezaz, Tariq; Na-Nakorn, Uthairat; Srikulnath, Kornsorn
Genome-wide SNP analysis suggests male heterogamety in bighead catfish (Clarias macrocephalus, Günther, 1864) Journal Article
In: Aquaculture, vol. 543, 2021, (Cited by: 23).
@article{Nguyen2021,
title = {Genome-wide SNP analysis suggests male heterogamety in bighead catfish (Clarias macrocephalus, Günther, 1864)},
author = {Dung Ho My Nguyen and Jatupong Ponjarat and Nararat Laopichienpong and Ekaphan Kraichak and Thitipong Panthum and Worapong Singchat and Syed Farhan Ahmad and Narongrit Muangmai and Prateep Duengkae and Surin Peyachoknagul and Tariq Ezaz and Uthairat Na-Nakorn and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85108721486&doi=10.1016%2fj.aquaculture.2021.737005&partnerID=40&md5=36cb74487d9dc099cfa04b6a60b1e6b6},
doi = {10.1016/j.aquaculture.2021.737005},
year = {2021},
date = {2021-01-01},
journal = {Aquaculture},
volume = {543},
publisher = {Frontiers Media S.A.},
abstract = {Bighead catfish (Clarias macrocephalus, Günther, 1864) is an important aquacultural species that plays a crucial role in the economy of Southeast Asia. Crossbreeding between female bighead catfish and male African catfish (C. gariepinus, Burchell, 1822) is used to produce hybrids with vigorous phenotypes. However, sterility of the hybrid is a major obstacle to their mass production. There is an emerging hypothesis that the complexity of the sex-determination system between two parental species might affect sterility. Previous studies investigated the co-existence of XX/XY and ZZ/ZW sex-determination systems in the African catfish population in Thailand, but in bighead catfish the sex-determination system remains poorly understood. In this study, the sex-determination system of the bighead catfish was examined using Diversity Arrays Technology to identify the genomic variants associated with sex-linked regions. The results support the hypothesis of the previous study that the bighead catfish might exhibit a male heterogametic XX/XY sex-determination system with multiple male-linked loci. One of the male-linked loci showed homology with the GTSF1L gene, which shows a testis-enriched expression pattern. Two of the male-linked loci were partially homologous to transposable element. Male-linked loci on the putative Y sex chromosome were identified as an extremely small proportion of the genome. A PCR-based DNA marker was developed to validate the male-linked loci in the bighead catfish. Our findings provide novel insights into sex-determination mechanisms in clariid catfish and will contribute to genetic improvements in breeding programs. © 2021 Elsevier B.V.},
note = {Cited by: 23},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bighead catfish (Clarias macrocephalus, Günther, 1864) is an important aquacultural species that plays a crucial role in the economy of Southeast Asia. Crossbreeding between female bighead catfish and male African catfish (C. gariepinus, Burchell, 1822) is used to produce hybrids with vigorous phenotypes. However, sterility of the hybrid is a major obstacle to their mass production. There is an emerging hypothesis that the complexity of the sex-determination system between two parental species might affect sterility. Previous studies investigated the co-existence of XX/XY and ZZ/ZW sex-determination systems in the African catfish population in Thailand, but in bighead catfish the sex-determination system remains poorly understood. In this study, the sex-determination system of the bighead catfish was examined using Diversity Arrays Technology to identify the genomic variants associated with sex-linked regions. The results support the hypothesis of the previous study that the bighead catfish might exhibit a male heterogametic XX/XY sex-determination system with multiple male-linked loci. One of the male-linked loci showed homology with the GTSF1L gene, which shows a testis-enriched expression pattern. Two of the male-linked loci were partially homologous to transposable element. Male-linked loci on the putative Y sex chromosome were identified as an extremely small proportion of the genome. A PCR-based DNA marker was developed to validate the male-linked loci in the bighead catfish. Our findings provide novel insights into sex-determination mechanisms in clariid catfish and will contribute to genetic improvements in breeding programs. © 2021 Elsevier B.V.
Panthum, T.; Singchat, W.; Laopichienpong, N.; Ahmad, S. F.; Kraichak, E.; Duengkae, P.; Muangmai, N.; Kitana, N.; Srikulnath, K.
Genome-wide snp analysis of male and female rice field frogs, hoplobatrachus rugulosus, supports a non-genetic sex determination system Journal Article
In: Diversity, vol. 13, no. 10, 2021, (cited By 1).
@article{Panthum2021b,
title = {Genome-wide snp analysis of male and female rice field frogs, hoplobatrachus rugulosus, supports a non-genetic sex determination system},
author = {T. Panthum and W. Singchat and N. Laopichienpong and S. F. Ahmad and E. Kraichak and P. Duengkae and N. Muangmai and N. Kitana and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85118178291&doi=10.3390%2fd13100501&partnerID=40&md5=9d906b9b139a03f9200a85cf543220e5},
doi = {10.3390/d13100501},
year = {2021},
date = {2021-01-01},
journal = {Diversity},
volume = {13},
number = {10},
abstract = {Sex determination systems (SDSs) in anurans are diverse and have undergone independent evolutionary transitions among species. The mode of sexual reproduction of the rice field frog (Hoplobatrachus rugulosus)—an economically viable, edible amphibian species—is not well known. Previous studies have proposed that threshold temperature conditions may determine sex in these frogs. To elucidate the SDS in H. rugulosus, we karyotyped 10 male and 12 female frogs, and performed fluorescence in situ hybridization combined with sequencing analyses using DArTseq™. Our results revealed a highly conserved karyotype with no sex chromosome heteromorphism, and the sequencing analyses did not identify any consistent sex-linked loci, supporting the hypothesis of temperature-dependent sex determination. The results of this study, and others, on SDSs in the rice field frog and related species also provide support for the theory that heteromorphic sex chromosomes may lead to an evolutionary trap that prevents variable SDSs. These findings add important information to the body of knowledge on H. rugulosus and are likely to have a significant impact on the productivity and economic success of rice field frog farming. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Sex determination systems (SDSs) in anurans are diverse and have undergone independent evolutionary transitions among species. The mode of sexual reproduction of the rice field frog (Hoplobatrachus rugulosus)—an economically viable, edible amphibian species—is not well known. Previous studies have proposed that threshold temperature conditions may determine sex in these frogs. To elucidate the SDS in H. rugulosus, we karyotyped 10 male and 12 female frogs, and performed fluorescence in situ hybridization combined with sequencing analyses using DArTseq™. Our results revealed a highly conserved karyotype with no sex chromosome heteromorphism, and the sequencing analyses did not identify any consistent sex-linked loci, supporting the hypothesis of temperature-dependent sex determination. The results of this study, and others, on SDSs in the rice field frog and related species also provide support for the theory that heteromorphic sex chromosomes may lead to an evolutionary trap that prevents variable SDSs. These findings add important information to the body of knowledge on H. rugulosus and are likely to have a significant impact on the productivity and economic success of rice field frog farming. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Areesirisuk, Prapatsorn; Srikulnath, Kornsorn; Onsod, Preyaporn; Jaroensuk, Juthamas; Rerkamnuaychoke, Budsaba
Haplogroup distribution of 309 thais from admixed populations across the country by hvi and hvii sanger-type sequencing Journal Article
In: Diversity, vol. 13, no. 10, 2021, (Cited by: 1; All Open Access, Gold Open Access).
@article{Areesirisuk2021,
title = {Haplogroup distribution of 309 thais from admixed populations across the country by hvi and hvii sanger-type sequencing},
author = {Prapatsorn Areesirisuk and Kornsorn Srikulnath and Preyaporn Onsod and Juthamas Jaroensuk and Budsaba Rerkamnuaychoke},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85118156781&doi=10.3390%2fd13100496&partnerID=40&md5=186caa991f88524ba12d8c8c616a7ec7},
doi = {10.3390/d13100496},
year = {2021},
date = {2021-01-01},
journal = {Diversity},
volume = {13},
number = {10},
publisher = {MDPI},
abstract = {The mitochondrial DNA (mtDNA) control region sequences for the hypervariable regions I (HVI) and II (HVII) of 309 Thai citizens were investigated using Sanger-type sequencing to generate an mtDNA reference dataset for forensic casework, and the haplogroup distribution within geographically proximal Asian populations was analyzed. The population sample set contained 264 distinct haplotypes and showed high haplotype diversity, low matching probability, and high powers of discrimination, at 0.9985, 0.4744%, and 0.9953, respectively, compared with previous reports. Sub-haplogroup F1a showed the highest frequency in the Thai population, similar to Southeast Asian populations. The haplotype frequencies in the northern, northeastern, and southern populations of Thailand illustrate the relevance of social, religious, and historical factors in the biogeographical origin of the admixed Thai population as a whole. The HVI and HVII reference datasets will be useful for forensic casework applications, with improved genetic information content and discriminatory power compared to currently available techniques. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {Cited by: 1; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The mitochondrial DNA (mtDNA) control region sequences for the hypervariable regions I (HVI) and II (HVII) of 309 Thai citizens were investigated using Sanger-type sequencing to generate an mtDNA reference dataset for forensic casework, and the haplogroup distribution within geographically proximal Asian populations was analyzed. The population sample set contained 264 distinct haplotypes and showed high haplotype diversity, low matching probability, and high powers of discrimination, at 0.9985, 0.4744%, and 0.9953, respectively, compared with previous reports. Sub-haplogroup F1a showed the highest frequency in the Thai population, similar to Southeast Asian populations. The haplotype frequencies in the northern, northeastern, and southern populations of Thailand illustrate the relevance of social, religious, and historical factors in the biogeographical origin of the admixed Thai population as a whole. The HVI and HVII reference datasets will be useful for forensic casework applications, with improved genetic information content and discriminatory power compared to currently available techniques. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Srikulnath, Kornsorn; Ahmad, Syed Farhan; Singchat, Worapong; Panthum, Thitipong
Why do some vertebrates have microchromosomes? Journal Article
In: Cells, vol. 10, no. 9, 2021, (Cited by: 27; All Open Access, Gold Open Access, Green Open Access).
@article{Srikulnath2021,
title = {Why do some vertebrates have microchromosomes?},
author = {Kornsorn Srikulnath and Syed Farhan Ahmad and Worapong Singchat and Thitipong Panthum},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85115898577&doi=10.3390%2fcells10092182&partnerID=40&md5=2cb2a6f060dafe8bf9dfbfe885e42511},
doi = {10.3390/cells10092182},
year = {2021},
date = {2021-01-01},
journal = {Cells},
volume = {10},
number = {9},
publisher = {MDPI},
abstract = {With more than 70,000 living species, vertebrates have a huge impact on the field of biology and research, including karyotype evolution. One prominent aspect of many vertebrate karyotypes is the enigmatic occurrence of tiny and often cytogenetically indistinguishable microchromosomes, which possess distinctive features compared to macrochromosomes. Why certain vertebrate species carry these microchromosomes in some lineages while others do not, and how they evolve remain open questions. New studies have shown that microchromosomes exhibit certain unique characteristics of genome structure and organization, such as high gene densities, low heterochromatin levels, and high rates of recombination. Our review focuses on recent concepts to expand current knowledge on the dynamic nature of karyotype evolution in vertebrates, raising important questions regarding the evolutionary origins and ramifications of microchromosomes. We introduce the basic karyotypic features to clarify the size, shape, and morphology of macro- and microchromosomes and report their distribution across different lineages. Finally, we characterize the mechanisms of different evolutionary forces underlying the origin and evolution of microchromosomes. © 2021 by the authors.},
note = {Cited by: 27; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
With more than 70,000 living species, vertebrates have a huge impact on the field of biology and research, including karyotype evolution. One prominent aspect of many vertebrate karyotypes is the enigmatic occurrence of tiny and often cytogenetically indistinguishable microchromosomes, which possess distinctive features compared to macrochromosomes. Why certain vertebrate species carry these microchromosomes in some lineages while others do not, and how they evolve remain open questions. New studies have shown that microchromosomes exhibit certain unique characteristics of genome structure and organization, such as high gene densities, low heterochromatin levels, and high rates of recombination. Our review focuses on recent concepts to expand current knowledge on the dynamic nature of karyotype evolution in vertebrates, raising important questions regarding the evolutionary origins and ramifications of microchromosomes. We introduce the basic karyotypic features to clarify the size, shape, and morphology of macro- and microchromosomes and report their distribution across different lineages. Finally, we characterize the mechanisms of different evolutionary forces underlying the origin and evolution of microchromosomes. © 2021 by the authors.
Thintip, Jitmat; Singchat, Worapong; Ahmad, Syed Farhan; Ariyaraphong, Nattakan; Muangmai, Narongrit; Chamchumroon, Wiyada; Pitiwong, Klinsak; Suksavate, Warong; Duangjai, Sutee; Duengkae, Prateep; Srikulnath, Kornsorn
In: PLoS ONE, vol. 16, no. 8 August, 2021, (Cited by: 7; All Open Access, Gold Open Access, Green Open Access).
@article{Thintip2021,
title = {Reduced genetic variability in a captive-bred population of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) revealed by microsatellite genotyping and Dloop sequencing},
author = {Jitmat Thintip and Worapong Singchat and Syed Farhan Ahmad and Nattakan Ariyaraphong and Narongrit Muangmai and Wiyada Chamchumroon and Klinsak Pitiwong and Warong Suksavate and Sutee Duangjai and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85113905155&doi=10.1371%2fjournal.pone.0256573&partnerID=40&md5=272e0667916ad9b63cc0773597147fe5},
doi = {10.1371/journal.pone.0256573},
year = {2021},
date = {2021-01-01},
journal = {PLoS ONE},
volume = {16},
number = {8 August},
publisher = {Public Library of Science},
abstract = {Captive breeding programs are crucial to ensure the survival of endangered species and ultimately to reintroduce individuals into the wild. However, captive-bred populations can also deteriorate due to inbreeding depression and reduction of genetic variability. We genotyped a captive population of 82 individuals of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) at the Doi Tung Wildlife Breeding Center to assess the genetic consequences associated with captive breeding. Analysis of microsatellite loci and mitochondrial D-loop sequences reveal significantly reduced genetic differentiation and a shallow population structure. Despite the low genetic variability, no bottleneck was observed but 12 microsatellite loci were informative in reflecting probable inbreeding. These findings provide a valuable source of knowledge to maximize genetic variability and enhance the success of future conservation plans for captive and wild populations of Hume's pheasant. © 2021 Thintip et al.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.},
note = {Cited by: 7; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Captive breeding programs are crucial to ensure the survival of endangered species and ultimately to reintroduce individuals into the wild. However, captive-bred populations can also deteriorate due to inbreeding depression and reduction of genetic variability. We genotyped a captive population of 82 individuals of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) at the Doi Tung Wildlife Breeding Center to assess the genetic consequences associated with captive breeding. Analysis of microsatellite loci and mitochondrial D-loop sequences reveal significantly reduced genetic differentiation and a shallow population structure. Despite the low genetic variability, no bottleneck was observed but 12 microsatellite loci were informative in reflecting probable inbreeding. These findings provide a valuable source of knowledge to maximize genetic variability and enhance the success of future conservation plans for captive and wild populations of Hume's pheasant. © 2021 Thintip et al.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Ariyaraphong, Nattakan; Pansrikaew, Tanawat; Jangtarwan, Kornsuang; Thintip, Jitmat; Singchat, Worapong; Laopichienpong, Nararat; Pongsanarm, Tavun; Panthum, Thitipong; Suntronpong, Aorarat; Ahmad, Syed Farhan; Muangmai, Narongrit; Kongphoemph, Adisorn; Wongsodchuen, Apinya; Intapan, Sanya; Chamchumroon, Wiyada; Safoowong, Mongkol; Duengkae, Prateep; Srikulnath, Kornsorn
In: Global Ecology and Conservation, vol. 28, no. 6, 2021, (Cited by: 9; All Open Access, Gold Open Access).
@article{Ariyaraphong2021,
title = {Introduction of wild Chinese gorals into a captive population requires careful genetic breeding plan monitoring for successful long-term conservation},
author = {Nattakan Ariyaraphong and Tanawat Pansrikaew and Kornsuang Jangtarwan and Jitmat Thintip and Worapong Singchat and Nararat Laopichienpong and Tavun Pongsanarm and Thitipong Panthum and Aorarat Suntronpong and Syed Farhan Ahmad and Narongrit Muangmai and Adisorn Kongphoemph and Apinya Wongsodchuen and Sanya Intapan and Wiyada Chamchumroon and Mongkol Safoowong and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107727154&doi=10.1016%2fj.gecco.2021.e01675&partnerID=40&md5=5a0480eb645bca358d21411c5c3dfc62},
doi = {10.1016/j.gecco.2021.e01675},
year = {2021},
date = {2021-01-01},
journal = {Global Ecology and Conservation},
volume = {28},
number = {6},
publisher = {MDPI AG},
abstract = {The Chinese goral (Naemorhedus griseus) is a small goat-like animal, which is considered “vulnerable” due to its rapid decline in population in the wild. Captive breeding programs are necessary to prevent the extinction of Chinese gorals; however, reproduction in captivity reduces genetic diversity due to inbreeding. In 2020, a total of six wild Chinese gorals were introduced into a captive population of 73 individuals to improve the allelic gene pool. An assessment of captive gorals was conducted to trace and understand genetic diversity in the new captive state. Microsatellite genotyping and mitochondrial D-loop sequence analyses were performed to examine the genetic diversity and population structure. The results showed very low haplotype diversity, with a significant difference between He (0.477 ± 0.065) and Ho (0.196 ± 0.056), suggesting a high degree of inbreeding. This resulted in a limited ability to adapt to environmental change and low natural reproductive fitness, thus increasing the risk of population decline and eventual extinction. Management of captive breeding plans based on different subpopulations and haplotypes has been proposed to maximize genetic variability and enhance the success of future conservation plans. © 2021 The Authors},
note = {Cited by: 9; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The Chinese goral (Naemorhedus griseus) is a small goat-like animal, which is considered “vulnerable” due to its rapid decline in population in the wild. Captive breeding programs are necessary to prevent the extinction of Chinese gorals; however, reproduction in captivity reduces genetic diversity due to inbreeding. In 2020, a total of six wild Chinese gorals were introduced into a captive population of 73 individuals to improve the allelic gene pool. An assessment of captive gorals was conducted to trace and understand genetic diversity in the new captive state. Microsatellite genotyping and mitochondrial D-loop sequence analyses were performed to examine the genetic diversity and population structure. The results showed very low haplotype diversity, with a significant difference between He (0.477 ± 0.065) and Ho (0.196 ± 0.056), suggesting a high degree of inbreeding. This resulted in a limited ability to adapt to environmental change and low natural reproductive fitness, thus increasing the risk of population decline and eventual extinction. Management of captive breeding plans based on different subpopulations and haplotypes has been proposed to maximize genetic variability and enhance the success of future conservation plans. © 2021 The Authors
Ahmad, Syed Farhan; Singchat, Worapong; Panthum, Thitipong; Srikulnath, Kornsorn
Impact of repetitive dna elements on snake genome biology and evolution Journal Article
In: Cells, vol. 10, no. 7, 2021, (Cited by: 11; All Open Access, Gold Open Access).
@article{Ahmad2021,
title = {Impact of repetitive dna elements on snake genome biology and evolution},
author = {Syed Farhan Ahmad and Worapong Singchat and Thitipong Panthum and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85114082924&doi=10.3390%2fcells10071707&partnerID=40&md5=9e7ce1fede690239781527c28a23eee3},
doi = {10.3390/cells10071707},
year = {2021},
date = {2021-01-01},
journal = {Cells},
volume = {10},
number = {7},
publisher = {MDPI},
abstract = {The distinctive biology and unique evolutionary features of snakes make them fascinating model systems to elucidate how genomes evolve and how variation at the genomic level is inter-linked with phenotypic-level evolution. Similar to other eukaryotic genomes, large proportions of snake genomes contain repetitive DNA, including transposable elements (TEs) and satellite re-peats. The importance of repetitive DNA and its structural and functional role in the snake genome, remain unclear. This review highlights the major types of repeats and their proportions in snake genomes, reflecting the high diversity and composition of snake repeats. We present snakes as an emerging and important model system for the study of repetitive DNA under the impact of sex and microchromosome evolution. We assemble evidence to show that certain repetitive elements in snakes are transcriptionally active and demonstrate highly dynamic lineage-specific patterns as repeat sequences. We hypothesize that particular TEs can trigger different genomic mechanisms that might contribute to driving adaptive evolution in snakes. Finally, we review emerging approaches that may be used to study the expression of repetitive elements in complex genomes, such as snakes. The specific aspects presented here will stimulate further discussion on the role of genomic repeats in shaping snake evolution. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {Cited by: 11; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The distinctive biology and unique evolutionary features of snakes make them fascinating model systems to elucidate how genomes evolve and how variation at the genomic level is inter-linked with phenotypic-level evolution. Similar to other eukaryotic genomes, large proportions of snake genomes contain repetitive DNA, including transposable elements (TEs) and satellite re-peats. The importance of repetitive DNA and its structural and functional role in the snake genome, remain unclear. This review highlights the major types of repeats and their proportions in snake genomes, reflecting the high diversity and composition of snake repeats. We present snakes as an emerging and important model system for the study of repetitive DNA under the impact of sex and microchromosome evolution. We assemble evidence to show that certain repetitive elements in snakes are transcriptionally active and demonstrate highly dynamic lineage-specific patterns as repeat sequences. We hypothesize that particular TEs can trigger different genomic mechanisms that might contribute to driving adaptive evolution in snakes. Finally, we review emerging approaches that may be used to study the expression of repetitive elements in complex genomes, such as snakes. The specific aspects presented here will stimulate further discussion on the role of genomic repeats in shaping snake evolution. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Ariyaraphong, N.; Laopichienpong, N.; Singchat, W.; Panthum, T.; Ahmad, S. F.; Jattawa, D.; Duengkae, P.; Muangmai, N.; Suwanasopee, T.; Koonawootrittriron, S.; Srikulnath, K.
High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing Journal Article
In: Animals, vol. 11, no. 6, 2021, (cited By 5).
@article{Ariyaraphong2021b,
title = {High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing},
author = {N. Ariyaraphong and N. Laopichienpong and W. Singchat and T. Panthum and S. F. Ahmad and D. Jattawa and P. Duengkae and N. Muangmai and T. Suwanasopee and S. Koonawootrittriron and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107209977&doi=10.3390%2fani11061680&partnerID=40&md5=768fbcc498091ca40fd667bc46b56cc4},
doi = {10.3390/ani11061680},
year = {2021},
date = {2021-01-01},
journal = {Animals},
volume = {11},
number = {6},
abstract = {Domestication and artificial selection lead to the development of genetically divergent cattle breeds or hybrids that exhibit specific patterns of genetic diversity and population structure. Recently developed mitochondrial markers have allowed investigation of cattle diversity worldwide; however, an extensive study on the population-level genetic diversity and demography of dairy cattle in Thailand is still needed. Mitochondrial D-loop sequences were obtained from 179 individuals (hybrids of Bos taurus and B. indicus) sampled from nine different provinces. Fifty-one haplotypes, of which most were classified in haplogroup “I”, were found across all nine populations. All sampled populations showed severely reduced degrees of genetic differentiation, and low nucleotide diversity was observed in populations from central Thailand. Populations that originated from adjacent geographical areas tended to show high gene flow, as revealed by patterns of weak network structuring. Mismatch distribution analysis was suggestive of a stable population, with the recent occurrence of a slight expansion event. The results provide insights into the origins and the genetic relationships among local Thai cattle breeds and will be useful for guiding management of cattle breeding in Thailand. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 5},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Domestication and artificial selection lead to the development of genetically divergent cattle breeds or hybrids that exhibit specific patterns of genetic diversity and population structure. Recently developed mitochondrial markers have allowed investigation of cattle diversity worldwide; however, an extensive study on the population-level genetic diversity and demography of dairy cattle in Thailand is still needed. Mitochondrial D-loop sequences were obtained from 179 individuals (hybrids of Bos taurus and B. indicus) sampled from nine different provinces. Fifty-one haplotypes, of which most were classified in haplogroup “I”, were found across all nine populations. All sampled populations showed severely reduced degrees of genetic differentiation, and low nucleotide diversity was observed in populations from central Thailand. Populations that originated from adjacent geographical areas tended to show high gene flow, as revealed by patterns of weak network structuring. Mismatch distribution analysis was suggestive of a stable population, with the recent occurrence of a slight expansion event. The results provide insights into the origins and the genetic relationships among local Thai cattle breeds and will be useful for guiding management of cattle breeding in Thailand. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Benchaphattharaworakul, Benchapol; Phisanbut, Nalina; Srikulnath, Kornsorn; Piamsa-Nga, Punpiti
DNA assembly method for a non-model organism using a more distantly-related reference sequence Conference
Institute of Electrical and Electronics Engineers Inc., 2021, (Cited by: 0).
@conference{Benchaphattharaworakul2021564,
title = {DNA assembly method for a non-model organism using a more distantly-related reference sequence},
author = {Benchapol Benchaphattharaworakul and Nalina Phisanbut and Kornsorn Srikulnath and Punpiti Piamsa-Nga},
editor = {Kumsuwan Y.},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85112838056&doi=10.1109%2fECTI-CON51831.2021.9454937&partnerID=40&md5=0d76d344fc74aa7b8eec8bc9c14cdc25},
doi = {10.1109/ECTI-CON51831.2021.9454937},
year = {2021},
date = {2021-01-01},
journal = {ECTI-CON 2021 - 2021 18th International Conference on Electrical Engineering/Electronics, Computer, Telecommunications and Information Technology: Smart Electrical System and Technology, Proceedings},
pages = {564 – 567},
publisher = {Institute of Electrical and Electronics Engineers Inc.},
abstract = {A reference-guided algorithm for DNA assembly of non-model organisms is proposed. The method enables the use of not only within or closely-related species but also a more distantly-related species as a starting point to help to position reads using the longest common substring algorithm. The performance of the algorithm is evaluated by experiments into two parts. First, shotgun sequences of a known species are simulated as new species to verify the performance of the algorithm, where the references are arbitrarily selected. Second, the effects of distances between the reference and the target sequences are studied. A known sequence with noise injection is represented as a reference for assembling its shotgun sequences. BLAST is used as a quality measurement between the resulting sequence and the ground truth. The experimental results showed that when reference sequences and target sequences are in the same genus, query cover and percent identity are 99.84% and 99.89% respectively; and when they are in the same order, query cover and percent identity are 85.21% and 94.69% respectively. The algorithm can stand the differences between the reference sequences and target sequences up to 20% before the query cover and percent identity reduce to 95%. © 2021 IEEE.},
note = {Cited by: 0},
keywords = {},
pubstate = {published},
tppubtype = {conference}
}
A reference-guided algorithm for DNA assembly of non-model organisms is proposed. The method enables the use of not only within or closely-related species but also a more distantly-related species as a starting point to help to position reads using the longest common substring algorithm. The performance of the algorithm is evaluated by experiments into two parts. First, shotgun sequences of a known species are simulated as new species to verify the performance of the algorithm, where the references are arbitrarily selected. Second, the effects of distances between the reference and the target sequences are studied. A known sequence with noise injection is represented as a reference for assembling its shotgun sequences. BLAST is used as a quality measurement between the resulting sequence and the ground truth. The experimental results showed that when reference sequences and target sequences are in the same genus, query cover and percent identity are 99.84% and 99.89% respectively; and when they are in the same order, query cover and percent identity are 85.21% and 94.69% respectively. The algorithm can stand the differences between the reference sequences and target sequences up to 20% before the query cover and percent identity reduce to 95%. © 2021 IEEE.
Miura, Ikuo; Shams, Foyez; Lin, Si-Min; Cioffi, Marcelo Bello; Liehr, Thomas; Al-Rikabi, Ahmed; Kuwana, Chiao; Srikulnath, Kornsorn; Higaki, Yuya; Ezaz, Tariq
In: Cells, vol. 10, no. 3, pp. 1 – 10, 2021, (Cited by: 10; All Open Access, Gold Open Access, Green Open Access).
@article{Miura20211,
title = {Evolution of a multiple sex-chromosome system by three-sequential translocations among potential sex-chromosomes in the taiwanese frog odorrana swinhoana},
author = {Ikuo Miura and Foyez Shams and Si-Min Lin and Marcelo Bello Cioffi and Thomas Liehr and Ahmed Al-Rikabi and Chiao Kuwana and Kornsorn Srikulnath and Yuya Higaki and Tariq Ezaz},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85103863314&doi=10.3390%2fcells10030661&partnerID=40&md5=09da1bca3bcffbcb36c5b7d747be50be},
doi = {10.3390/cells10030661},
year = {2021},
date = {2021-01-01},
journal = {Cells},
volume = {10},
number = {3},
pages = {1 – 10},
publisher = {MDPI},
abstract = {Translocation between sex-chromosomes and autosomes generates multiple sex-chromosome systems. It happens unexpectedly, and therefore, the evolutionary meaning is not clear. The current study shows a multiple sex chromosome system comprising three different chromosome pairs in a Taiwanese brown frog (Odorrana swinhoana). The male-specific three translocations cre-ated a system of six sex-chromosomes, X1Y1X2Y2X3Y3-X1X1X2X2X3X3. It is unique in that the translocations occurred among three out of the six members of potential sex-determining chromosomes, which are known to be involved in sex-chromosome turnover in frogs, and the two out of three include orthologs of the sex-determining genes in mammals, birds and fishes. This rare case suggests sex-specific, nonrandom translocations and thus provides a new viewpoint for the evolutionary meaning of the multiple sex chromosome system. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {Cited by: 10; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Translocation between sex-chromosomes and autosomes generates multiple sex-chromosome systems. It happens unexpectedly, and therefore, the evolutionary meaning is not clear. The current study shows a multiple sex chromosome system comprising three different chromosome pairs in a Taiwanese brown frog (Odorrana swinhoana). The male-specific three translocations cre-ated a system of six sex-chromosomes, X1Y1X2Y2X3Y3-X1X1X2X2X3X3. It is unique in that the translocations occurred among three out of the six members of potential sex-determining chromosomes, which are known to be involved in sex-chromosome turnover in frogs, and the two out of three include orthologs of the sex-determining genes in mammals, birds and fishes. This rare case suggests sex-specific, nonrandom translocations and thus provides a new viewpoint for the evolutionary meaning of the multiple sex chromosome system. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Srikulnath, Kornsorn; Singchat, Worapong; Laopichienpong, Nararat; Ahmad, Syed Farhan; Jehangir, Maryam; Subpayakom, Navapong; Suntronpong, Aorarat; Jangtarwan, Kornsuang; Pongsanarm, Tavun; Panthum, Thitipong; Ariyaraphong, Nattakan; Camcuan, Jitlada; Duengkae, Prateep; Dokkaew, Sahabhop; Muangmai, Narongrit
Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans Journal Article
In: Genes and Genomics, vol. 43, no. 2, pp. 91 – 104, 2021, (Cited by: 10).
@article{Srikulnath202191,
title = {Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans},
author = {Kornsorn Srikulnath and Worapong Singchat and Nararat Laopichienpong and Syed Farhan Ahmad and Maryam Jehangir and Navapong Subpayakom and Aorarat Suntronpong and Kornsuang Jangtarwan and Tavun Pongsanarm and Thitipong Panthum and Nattakan Ariyaraphong and Jitlada Camcuan and Prateep Duengkae and Sahabhop Dokkaew and Narongrit Muangmai},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099913076&doi=10.1007%2fs13258-020-01027-2&partnerID=40&md5=efbc01fa20db1405a1aea9b4d18960c4},
doi = {10.1007/s13258-020-01027-2},
year = {2021},
date = {2021-01-01},
journal = {Genes and Genomics},
volume = {43},
number = {2},
pages = {91 – 104},
publisher = {Genetics Society of Korea},
abstract = {Background: The Siamese fighting fish (Betta splendens, also known as the betta) is well known in aquarium markets, and also presents an exciting new research model for studying parental care, aggressive behavior, and cryptically diverse pigmentation. However, concentrated efforts are required, both in the context of conservation biology and in its genetics, to address the problems of ongoing outbreeding depression, loss of biodiversity, and lack of scientific biological information. Objective: The evolutionary dynamics of the betta must be better understood at the genomic scale in order to resolve the phylogenetic status of unrecognized species, develop molecular markers to study variation in traits, and identify interesting sets of genes encoding various bioresource functions. Methods: The recent revolution in multi-omics approaches such as genomics, transcriptomics, epigenomics, and proteomics has uncovered genetic diversity and gained insights into many aspects of betta bioresources. Results: Here, we present current research and future plans in an ongoing megaproject to characterize the betta genome as de novo assemblies, genes and repeat annotations, generating data to study diverse biological phenomena. We highlight key questions that require answers and propose new directions and recommendations to develop bioresource management to protect and enhance the betta genus. Conclusion: Successful accomplishment of these plans will allow the creation of a reference annotated genome and provide valuable information at the molecular level that can be utilized to sustain biodiversity and eco-management of the betta to improve breeding programs for future biomedical research. © 2021, The Genetics Society of Korea.},
note = {Cited by: 10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Background: The Siamese fighting fish (Betta splendens, also known as the betta) is well known in aquarium markets, and also presents an exciting new research model for studying parental care, aggressive behavior, and cryptically diverse pigmentation. However, concentrated efforts are required, both in the context of conservation biology and in its genetics, to address the problems of ongoing outbreeding depression, loss of biodiversity, and lack of scientific biological information. Objective: The evolutionary dynamics of the betta must be better understood at the genomic scale in order to resolve the phylogenetic status of unrecognized species, develop molecular markers to study variation in traits, and identify interesting sets of genes encoding various bioresource functions. Methods: The recent revolution in multi-omics approaches such as genomics, transcriptomics, epigenomics, and proteomics has uncovered genetic diversity and gained insights into many aspects of betta bioresources. Results: Here, we present current research and future plans in an ongoing megaproject to characterize the betta genome as de novo assemblies, genes and repeat annotations, generating data to study diverse biological phenomena. We highlight key questions that require answers and propose new directions and recommendations to develop bioresource management to protect and enhance the betta genus. Conclusion: Successful accomplishment of these plans will allow the creation of a reference annotated genome and provide valuable information at the molecular level that can be utilized to sustain biodiversity and eco-management of the betta to improve breeding programs for future biomedical research. © 2021, The Genetics Society of Korea.
Wongtienchai, Parinya; Lapbenjakul, Sorravis; Jangtarwan, Kornsuang; Areesirisuk, Prapatsorn; Mahaprom, Rujira; Subpayakom, Navapong; Singchat, Worapong; Sillapaprayoon, Siwapech; Muangmai, Narongrit; Songchan, Ruthairat; Baicharoen, Sudarath; Duengkae, Prateep; Peyachoknagul, Surin; Srikulnath, Kornsorn
In: Journal of Zoological Systematics and Evolutionary Research, vol. 59, no. 2, pp. 484 – 497, 2021, (Cited by: 9; All Open Access, Gold Open Access).
@article{Wongtienchai2021484,
title = {Genetic management of a water monitor lizard (Varanus salvator macromaculatus) population at Bang Kachao Peninsula as a consequence of urbanization with Varanus Farm Kamphaeng Saen as the first captive research establishment},
author = {Parinya Wongtienchai and Sorravis Lapbenjakul and Kornsuang Jangtarwan and Prapatsorn Areesirisuk and Rujira Mahaprom and Navapong Subpayakom and Worapong Singchat and Siwapech Sillapaprayoon and Narongrit Muangmai and Ruthairat Songchan and Sudarath Baicharoen and Prateep Duengkae and Surin Peyachoknagul and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85096706549&doi=10.1111%2fjzs.12436&partnerID=40&md5=413e2c19b3f4f30afd1e34d79c2c19bd},
doi = {10.1111/jzs.12436},
year = {2021},
date = {2021-01-01},
journal = {Journal of Zoological Systematics and Evolutionary Research},
volume = {59},
number = {2},
pages = {484 – 497},
publisher = {Blackwell Publishing Ltd},
abstract = {Water monitors (Varanus salvator macromaculatus) are large lizards that inhabit wetlands. However, populations seem to be declining due to habitat fragmentation resulting from urban development. To develop an effective strategic conservation plan, the genetic diversity and population structure of water monitors at Bang Kachao Peninsula, a rich urban ecosystem in Bangkok, were analyzed using mitochondrial (mt) D-loop II sequences and microsatellite genotyping. Both genetic markers indicated a high degree of population-level genetic diversity. The consistency of the star-shaped haplotype network and results of neutrality tests strongly suggest the occurrence of a recent expansion in the population, possibly driven by anthropogenic urbanization. Subpopulations at Bang Kachao Peninsula are unlikely but gene flow between water monitors has occurred, which is suggestive of female-based dispersal. The large population of water monitors at Bang Kachao Peninsula creates conflict with local residents. Long-term population management through translocation has been conducted by captive management at Varanus Farm Kamphaeng Saen. The results of genetic monitoring indicate that the captive research population was soundly established. Comparison of allelic profiles between the two populations is necessary before translocation of water monitor groups from Bang Kachao Peninsula to Varanus Farm Kamphaeng Saen to reduce human-wildlife conflict. This work is the first step toward establishment of long-term ecological monitoring and an in situ/ex-situ conservation program, which are part of attempts to promote biodiversity in Thailand, following scientific principles. © 2020 Wiley-VCH GmbH},
note = {Cited by: 9; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Water monitors (Varanus salvator macromaculatus) are large lizards that inhabit wetlands. However, populations seem to be declining due to habitat fragmentation resulting from urban development. To develop an effective strategic conservation plan, the genetic diversity and population structure of water monitors at Bang Kachao Peninsula, a rich urban ecosystem in Bangkok, were analyzed using mitochondrial (mt) D-loop II sequences and microsatellite genotyping. Both genetic markers indicated a high degree of population-level genetic diversity. The consistency of the star-shaped haplotype network and results of neutrality tests strongly suggest the occurrence of a recent expansion in the population, possibly driven by anthropogenic urbanization. Subpopulations at Bang Kachao Peninsula are unlikely but gene flow between water monitors has occurred, which is suggestive of female-based dispersal. The large population of water monitors at Bang Kachao Peninsula creates conflict with local residents. Long-term population management through translocation has been conducted by captive management at Varanus Farm Kamphaeng Saen. The results of genetic monitoring indicate that the captive research population was soundly established. Comparison of allelic profiles between the two populations is necessary before translocation of water monitor groups from Bang Kachao Peninsula to Varanus Farm Kamphaeng Saen to reduce human-wildlife conflict. This work is the first step toward establishment of long-term ecological monitoring and an in situ/ex-situ conservation program, which are part of attempts to promote biodiversity in Thailand, following scientific principles. © 2020 Wiley-VCH GmbH
Nguyen, D. H. M.; Panthum, T.; Ponjarat, J.; Laopichienpong, N.; Kraichak, E.; Singchat, W.; Ahmad, S. F.; Muangmai, N.; Peyachoknagul, S.; Na-Nakorn, U.; Srikulnath, K.
An Investigation of ZZ/ZW and XX/XY Sex Determination Systems in North African Catfish (Clarias gariepinus, Burchell, 1822) Journal Article
In: Frontiers in Genetics, vol. 11, 2021, (cited By 8).
@article{Nguyen2021b,
title = {An Investigation of ZZ/ZW and XX/XY Sex Determination Systems in North African Catfish (Clarias gariepinus, Burchell, 1822)},
author = {D. H. M. Nguyen and T. Panthum and J. Ponjarat and N. Laopichienpong and E. Kraichak and W. Singchat and S. F. Ahmad and N. Muangmai and S. Peyachoknagul and U. Na-Nakorn and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099658568&doi=10.3389%2ffgene.2020.562856&partnerID=40&md5=9a346e1d25138630e1050f2dcad0e6a7},
doi = {10.3389/fgene.2020.562856},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in Genetics},
volume = {11},
abstract = {An investigation of sex-specific loci may provide important insights into fish sex determination strategies. This may be useful for biotechnological purposes, for example, to produce all-male or all-female fish for commercial breeding. The North African catfish species, Clarias gariepinus, has been widely adopted for aquaculture because its superior growth and disease resistance render the species suitable for hybridization with other catfish to improve the productivity and quality of fish meat. This species has either a ZZ/ZW or XX/XY sex determination system. Here, we investigate and characterize these systems using high-throughput genome complexity reduction sequencing as Diversity Arrays Technology. This approach was effective in identifying moderately sex-linked loci with both single-nucleotide polymorphisms (SNPs) and restriction fragment presence/absence (PA) markers in 30 perfectly sexed individuals of C. gariepinus. However, SNPs based markers were not found in this study. In total, 41 loci met the criteria for being moderately male-linked (with male vs. female ratios 80:20 and 70:30), while 25 loci were found to be moderately linked to female sex. No strictly male- or female-linked loci were detected. Seven moderately male-linked loci were partially homologous to some classes of transposable elements and three moderately male-linked loci were partially homologous to functional genes. Our data showed that the male heterogametic XX/XY sex determination system should co-exist with the ZZ/ZW system in C. gariepinus. Our finding of the co-existence of XX/XY and ZZ/ZW systems can be applied to benefit commercial breeding of this species in Thailand. This approach using moderately sex-linked loci provides a solid baseline for revealing sex determination mechanisms and identify potential sex determination regions in catfish, allowing further investigation of genetic improvements in breeding programs. © Copyright © 2021 Nguyen, Panthum, Ponjarat, Laopichienpong, Kraichak, Singchat, Ahmad, Muangmai, Peyachoknagul, Na-Nakorn and Srikulnath.},
note = {cited By 8},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
An investigation of sex-specific loci may provide important insights into fish sex determination strategies. This may be useful for biotechnological purposes, for example, to produce all-male or all-female fish for commercial breeding. The North African catfish species, Clarias gariepinus, has been widely adopted for aquaculture because its superior growth and disease resistance render the species suitable for hybridization with other catfish to improve the productivity and quality of fish meat. This species has either a ZZ/ZW or XX/XY sex determination system. Here, we investigate and characterize these systems using high-throughput genome complexity reduction sequencing as Diversity Arrays Technology. This approach was effective in identifying moderately sex-linked loci with both single-nucleotide polymorphisms (SNPs) and restriction fragment presence/absence (PA) markers in 30 perfectly sexed individuals of C. gariepinus. However, SNPs based markers were not found in this study. In total, 41 loci met the criteria for being moderately male-linked (with male vs. female ratios 80:20 and 70:30), while 25 loci were found to be moderately linked to female sex. No strictly male- or female-linked loci were detected. Seven moderately male-linked loci were partially homologous to some classes of transposable elements and three moderately male-linked loci were partially homologous to functional genes. Our data showed that the male heterogametic XX/XY sex determination system should co-exist with the ZZ/ZW system in C. gariepinus. Our finding of the co-existence of XX/XY and ZZ/ZW systems can be applied to benefit commercial breeding of this species in Thailand. This approach using moderately sex-linked loci provides a solid baseline for revealing sex determination mechanisms and identify potential sex determination regions in catfish, allowing further investigation of genetic improvements in breeding programs. © Copyright © 2021 Nguyen, Panthum, Ponjarat, Laopichienpong, Kraichak, Singchat, Ahmad, Muangmai, Peyachoknagul, Na-Nakorn and Srikulnath.
Thintip, Jitmat; Ahmad, Syed Farhan; Singchat, Worapong; Laopichienpong, Nararat; Suntronpong, Aorarat; Panthum, Thitipong; Nguyen, Dung Ho My; Ariyaraphong, Nattakan; Muangmai, Narongrit; Suksawet, Warong; Duengkae, Prateep; Srikulnath, Kornsorn
Mitochondrial genome of bronze-winged jacana (Metopidius indicus, Latham 1790) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 6, no. 8, pp. 2251 – 2253, 2021, (Cited by: 0; All Open Access, Gold Open Access, Green Open Access).
@article{Thintip20212251,
title = {Mitochondrial genome of bronze-winged jacana (Metopidius indicus, Latham 1790)},
author = {Jitmat Thintip and Syed Farhan Ahmad and Worapong Singchat and Nararat Laopichienpong and Aorarat Suntronpong and Thitipong Panthum and Dung Ho My Nguyen and Nattakan Ariyaraphong and Narongrit Muangmai and Warong Suksawet and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85111835903&doi=10.1080%2f23802359.2021.1945971&partnerID=40&md5=9bf711f19dab14a22253dc0f1c2d0a2f},
doi = {10.1080/23802359.2021.1945971},
year = {2021},
date = {2021-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {6},
number = {8},
pages = {2251 – 2253},
publisher = {Taylor and Francis Ltd.},
abstract = {We reported the mitochondrial genome (mitogenome) of bronze-winged jacana (Metopidius indicus, Latham 1790). The circular mitogenome was 17,208 base pairs (bp) in length, containing 13 protein-coding genes, two rRNAs, 22 tRNAs, and a non-coding control region. A DNA spacer 109 bp long was also detected between ND5 and Cytb. Phylogenetic analysis indicated that M. indicus was more closely related with the genera Himantopus, Jacana and Hydrophasianus. This annotated mitogenome reference can be utilized as a data resource for comparative mitogenomics of waders or shorebirds, with possible use in ecological and evolutionary studies. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {Cited by: 0; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
We reported the mitochondrial genome (mitogenome) of bronze-winged jacana (Metopidius indicus, Latham 1790). The circular mitogenome was 17,208 base pairs (bp) in length, containing 13 protein-coding genes, two rRNAs, 22 tRNAs, and a non-coding control region. A DNA spacer 109 bp long was also detected between ND5 and Cytb. Phylogenetic analysis indicated that M. indicus was more closely related with the genera Himantopus, Jacana and Hydrophasianus. This annotated mitogenome reference can be utilized as a data resource for comparative mitogenomics of waders or shorebirds, with possible use in ecological and evolutionary studies. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Laopichienpong, Nararat; Ahmad, Syed Farhan; Singchat, Worapong; Suntronpong, Aorarat; Pongsanarm, Tavun; Jangtarwan, Kornsuang; Bulan, Jakaphan; Pansrikaew, Tanawat; Panthum, Thitipong; Ariyaraphong, Nattakan; Subpayakom, Navapong; Dokkaew, Sahabhop; Muangmai, Narongrit; Duengkae, Prateep; Srikulnath, Kornsorn
Complete mitochondrial genome of Mekong fighting fish, Betta smaragdina (Teleostei: Osphronemidae) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 6, no. 3, pp. 776 – 778, 2021, (Cited by: 2; All Open Access, Gold Open Access, Green Open Access).
@article{Laopichienpong2021776,
title = {Complete mitochondrial genome of Mekong fighting fish, Betta smaragdina (Teleostei: Osphronemidae)},
author = {Nararat Laopichienpong and Syed Farhan Ahmad and Worapong Singchat and Aorarat Suntronpong and Tavun Pongsanarm and Kornsuang Jangtarwan and Jakaphan Bulan and Tanawat Pansrikaew and Thitipong Panthum and Nattakan Ariyaraphong and Navapong Subpayakom and Sahabhop Dokkaew and Narongrit Muangmai and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85102445931&doi=10.1080%2f23802359.2021.1882893&partnerID=40&md5=b5c619487b002a671672981925640346},
doi = {10.1080/23802359.2021.1882893},
year = {2021},
date = {2021-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {6},
number = {3},
pages = {776 – 778},
publisher = {Taylor and Francis Ltd.},
abstract = {Mekong fighting fish (Betta smaragdina) are found in Northeast Thailand. A complete mitochondrial genome (mitogenome) of B. smaragdina was assembled and annotated. Mitogenome sequences were 16,372 bp in length, with slight AT bias (59.8%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. smaragdina showed closer relationship with B. splendens and B. mahachaiensis as the bubble-nesting group, compared to the mouthbrooder group (B. apollon, B. simplex, and B. pi). Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of betta bioresources to improve conservation programs. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {Cited by: 2; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mekong fighting fish (Betta smaragdina) are found in Northeast Thailand. A complete mitochondrial genome (mitogenome) of B. smaragdina was assembled and annotated. Mitogenome sequences were 16,372 bp in length, with slight AT bias (59.8%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. smaragdina showed closer relationship with B. splendens and B. mahachaiensis as the bubble-nesting group, compared to the mouthbrooder group (B. apollon, B. simplex, and B. pi). Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of betta bioresources to improve conservation programs. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Laopichienpong, Nararat; Kraichak, Ekaphan; Singchat, Worapong; Sillapaprayoon, Siwapech; Muangmai, Narongrit; Suntrarachun, Sunutcha; Baicharoen, Sudarath; Peyachoknagul, Surin; Chanhome, Lawan; Ezaz, Tariq; Srikulnath, Kornsorn
In: Genomics, vol. 113, no. 1P2, pp. 624 – 636, 2021, (Cited by: 14; All Open Access, Bronze Open Access).
@article{Laopichienpong2021624,
title = {Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes},
author = {Nararat Laopichienpong and Ekaphan Kraichak and Worapong Singchat and Siwapech Sillapaprayoon and Narongrit Muangmai and Sunutcha Suntrarachun and Sudarath Baicharoen and Surin Peyachoknagul and Lawan Chanhome and Tariq Ezaz and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85092101908&doi=10.1016%2fj.ygeno.2020.09.058&partnerID=40&md5=4806a0ec36dab3978302ab307dac1a96},
doi = {10.1016/j.ygeno.2020.09.058},
year = {2021},
date = {2021-01-01},
journal = {Genomics},
volume = {113},
number = {1P2},
pages = {624 – 636},
publisher = {Academic Press Inc.},
abstract = {Elucidation of the process of sex chromosome differentiation is necessary to understand the dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the Siamese cobra (Naja kaouthia) contains a large number of repeats and shares amniote sex chromosomal linkages. Diversity Arrays Technology provides an effective approach to identify sex-specific loci that are epoch-making, to understand the dynamics of molecular transitions between the Z and W sex chromosomes in a snake lineage. From a total of 543 sex-specific loci, 90 showed partial homology with sex chromosomes of several amniotes and 89 loci were homologous to transposable elements. Two loci were confirmed as W-specific nucleotides after PCR amplification. These loci might result from a sex chromosome differentiation process and involve putative sex-determination regions in the Siamese cobra. Sex-specific loci shared linkage homologies among amniote sex chromosomes, supporting an ancestral super-sex chromosome. © 2020 Elsevier Inc.},
note = {Cited by: 14; All Open Access, Bronze Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Elucidation of the process of sex chromosome differentiation is necessary to understand the dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the Siamese cobra (Naja kaouthia) contains a large number of repeats and shares amniote sex chromosomal linkages. Diversity Arrays Technology provides an effective approach to identify sex-specific loci that are epoch-making, to understand the dynamics of molecular transitions between the Z and W sex chromosomes in a snake lineage. From a total of 543 sex-specific loci, 90 showed partial homology with sex chromosomes of several amniotes and 89 loci were homologous to transposable elements. Two loci were confirmed as W-specific nucleotides after PCR amplification. These loci might result from a sex chromosome differentiation process and involve putative sex-determination regions in the Siamese cobra. Sex-specific loci shared linkage homologies among amniote sex chromosomes, supporting an ancestral super-sex chromosome. © 2020 Elsevier Inc.
Ariyaraphong, Nattakan; Laopichienpong, Nararat; Singchat, Worapong; Panthum, Thitipong; Ahmad, Syed Farhan; Jattawa, Danai; Duengkae, Prateep; Muangmai, Narongrit; Suwanasopee, Thanathip; Koonawootrittriron, Skorn; Srikulnath, Kornsorn
High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing Journal Article
In: Animals, vol. 11, no. 6, 2021, (Cited by: 8; All Open Access, Gold Open Access, Green Open Access).
@article{Ariyaraphong2021c,
title = {High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing},
author = {Nattakan Ariyaraphong and Nararat Laopichienpong and Worapong Singchat and Thitipong Panthum and Syed Farhan Ahmad and Danai Jattawa and Prateep Duengkae and Narongrit Muangmai and Thanathip Suwanasopee and Skorn Koonawootrittriron and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107209977&doi=10.3390%2fani11061680&partnerID=40&md5=768fbcc498091ca40fd667bc46b56cc4},
doi = {10.3390/ani11061680},
year = {2021},
date = {2021-01-01},
journal = {Animals},
volume = {11},
number = {6},
note = {Cited by: 8; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wongtienchai, Parinya; Lapbenjakul, Sorravis; Jangtarwan, Kornsuang; Areesirisuk, Prapatsorn; Mahaprom, Rujira; Subpayakom, Navapong; Singchat, Worapong; Sillapaprayoon, Siwapech; Muangmai, Narongrit; Songchan, Ruthairat; Baicharoen, Sudarath; Duengkae, Prateep; Peyachoknagul, Surin; Srikulnath, Kornsorn
In: Journal of Zoological Systematics and Evolutionary Research, vol. 59, no. 2, pp. 484 – 497, 2021, (Cited by: 9; All Open Access, Gold Open Access).
@article{Wongtienchai2021484b,
title = {Genetic management of a water monitor lizard (Varanus salvator macromaculatus) population at Bang Kachao Peninsula as a consequence of urbanization with Varanus Farm Kamphaeng Saen as the first captive research establishment},
author = {Parinya Wongtienchai and Sorravis Lapbenjakul and Kornsuang Jangtarwan and Prapatsorn Areesirisuk and Rujira Mahaprom and Navapong Subpayakom and Worapong Singchat and Siwapech Sillapaprayoon and Narongrit Muangmai and Ruthairat Songchan and Sudarath Baicharoen and Prateep Duengkae and Surin Peyachoknagul and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85096706549&doi=10.1111%2fjzs.12436&partnerID=40&md5=413e2c19b3f4f30afd1e34d79c2c19bd},
doi = {10.1111/jzs.12436},
year = {2021},
date = {2021-01-01},
journal = {Journal of Zoological Systematics and Evolutionary Research},
volume = {59},
number = {2},
pages = {484 – 497},
note = {Cited by: 9; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Areesirisuk, Prapatsorn; Srikulnath, Kornsorn; Onsod, Preyaporn; Jaroensuk, Juthamas; Rerkamnuaychoke, Budsaba
Haplogroup distribution of 309 thais from admixed populations across the country by hvi and hvii sanger-type sequencing Journal Article
In: Diversity, vol. 13, no. 10, 2021, (Cited by: 1; All Open Access, Gold Open Access).
@article{Areesirisuk2021b,
title = {Haplogroup distribution of 309 thais from admixed populations across the country by hvi and hvii sanger-type sequencing},
author = {Prapatsorn Areesirisuk and Kornsorn Srikulnath and Preyaporn Onsod and Juthamas Jaroensuk and Budsaba Rerkamnuaychoke},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85118156781&doi=10.3390%2fd13100496&partnerID=40&md5=186caa991f88524ba12d8c8c616a7ec7},
doi = {10.3390/d13100496},
year = {2021},
date = {2021-01-01},
journal = {Diversity},
volume = {13},
number = {10},
note = {Cited by: 1; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Hata, Ayano; Nunome, Mitsuo; Suwanasopee, Thanathip; Duengkae, Prateep; Chaiwatana, Soontorn; Chamchumroon, Wiyada; Suzuki, Takayuki; Koonawootrittriron, Skorn; Matsuda, Yoichi; Srikulnath, Kornsorn
Origin and evolutionary history of domestic chickens inferred from a large population study of Thai red junglefowl and indigenous chickens Journal Article
In: Scientific Reports, vol. 11, no. 1, 2021, (Cited by: 37; All Open Access, Gold Open Access).
@article{Hata2021b,
title = {Origin and evolutionary history of domestic chickens inferred from a large population study of Thai red junglefowl and indigenous chickens},
author = {Ayano Hata and Mitsuo Nunome and Thanathip Suwanasopee and Prateep Duengkae and Soontorn Chaiwatana and Wiyada Chamchumroon and Takayuki Suzuki and Skorn Koonawootrittriron and Yoichi Matsuda and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099950448&doi=10.1038%2fs41598-021-81589-7&partnerID=40&md5=fabf7f20ad86e42ef8cba6adeb365ab9},
doi = {10.1038/s41598-021-81589-7},
year = {2021},
date = {2021-01-01},
journal = {Scientific Reports},
volume = {11},
number = {1},
note = {Cited by: 37; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Nguyen, Dung Ho My; Panthum, Thitipong; Ponjarat, Jatupong; Laopichienpong, Nararat; Kraichak, Ekaphan; Singchat, Worapong; Ahmad, Syed Farhan; Muangmai, Narongrit; Peyachoknagul, Surin; Na-Nakorn, Uthairat; Srikulnath, Kornsorn
An Investigation of ZZ/ZW and XX/XY Sex Determination Systems in North African Catfish (Clarias gariepinus, Burchell, 1822) Journal Article
In: Frontiers in Genetics, vol. 11, 2021, (Cited by: 21; All Open Access, Gold Open Access, Green Open Access).
@article{Nguyen2021c,
title = {An Investigation of ZZ/ZW and XX/XY Sex Determination Systems in North African Catfish (Clarias gariepinus, Burchell, 1822)},
author = {Dung Ho My Nguyen and Thitipong Panthum and Jatupong Ponjarat and Nararat Laopichienpong and Ekaphan Kraichak and Worapong Singchat and Syed Farhan Ahmad and Narongrit Muangmai and Surin Peyachoknagul and Uthairat Na-Nakorn and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099658568&doi=10.3389%2ffgene.2020.562856&partnerID=40&md5=9a346e1d25138630e1050f2dcad0e6a7},
doi = {10.3389/fgene.2020.562856},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in Genetics},
volume = {11},
note = {Cited by: 21; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ariyaraphong, Nattakan; Pansrikaew, Tanawat; Jangtarwan, Kornsuang; Thintip, Jitmat; Singchat, Worapong; Laopichienpong, Nararat; Pongsanarm, Tavun; Panthum, Thitipong; Suntronpong, Aorarat; Ahmad, Syed Farhan; Muangmai, Narongrit; Kongphoemph, Adisorn; Wongsodchuen, Apinya; Intapan, Sanya; Chamchumroon, Wiyada; Safoowong, Mongkol; Duengkae, Prateep; Srikulnath, Kornsorn
In: Global Ecology and Conservation, vol. 28, 2021, (Cited by: 9; All Open Access, Gold Open Access).
@article{Ariyaraphong2021d,
title = {Introduction of wild Chinese gorals into a captive population requires careful genetic breeding plan monitoring for successful long-term conservation},
author = {Nattakan Ariyaraphong and Tanawat Pansrikaew and Kornsuang Jangtarwan and Jitmat Thintip and Worapong Singchat and Nararat Laopichienpong and Tavun Pongsanarm and Thitipong Panthum and Aorarat Suntronpong and Syed Farhan Ahmad and Narongrit Muangmai and Adisorn Kongphoemph and Apinya Wongsodchuen and Sanya Intapan and Wiyada Chamchumroon and Mongkol Safoowong and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107727154&doi=10.1016%2fj.gecco.2021.e01675&partnerID=40&md5=5a0480eb645bca358d21411c5c3dfc62},
doi = {10.1016/j.gecco.2021.e01675},
year = {2021},
date = {2021-01-01},
journal = {Global Ecology and Conservation},
volume = {28},
note = {Cited by: 9; All Open Access, Gold Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Laopichienpong, Nararat; Kraichak, Ekaphan; Singchat, Worapong; Sillapaprayoon, Siwapech; Muangmai, Narongrit; Suntrarachun, Sunutcha; Baicharoen, Sudarath; Peyachoknagul, Surin; Chanhome, Lawan; Ezaz, Tariq; Srikulnath, Kornsorn
In: Genomics, vol. 113, no. 1P2, pp. 624 – 636, 2021, (Cited by: 14; All Open Access, Bronze Open Access).
@article{Laopichienpong2021624b,
title = {Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes},
author = {Nararat Laopichienpong and Ekaphan Kraichak and Worapong Singchat and Siwapech Sillapaprayoon and Narongrit Muangmai and Sunutcha Suntrarachun and Sudarath Baicharoen and Surin Peyachoknagul and Lawan Chanhome and Tariq Ezaz and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85092101908&doi=10.1016%2fj.ygeno.2020.09.058&partnerID=40&md5=4806a0ec36dab3978302ab307dac1a96},
doi = {10.1016/j.ygeno.2020.09.058},
year = {2021},
date = {2021-01-01},
journal = {Genomics},
volume = {113},
number = {1P2},
pages = {624 – 636},
note = {Cited by: 14; All Open Access, Bronze Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Srikulnath, Kornsorn; Singchat, Worapong; Laopichienpong, Nararat; Ahmad, Syed Farhan; Jehangir, Maryam; Subpayakom, Navapong; Suntronpong, Aorarat; Jangtarwan, Kornsuang; Pongsanarm, Tavun; Panthum, Thitipong; Ariyaraphong, Nattakan; Camcuan, Jitlada; Duengkae, Prateep; Dokkaew, Sahabhop; Muangmai, Narongrit
Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans Journal Article
In: Genes and Genomics, vol. 43, no. 2, pp. 91 – 104, 2021, (Cited by: 10).
@article{Srikulnath202191b,
title = {Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans},
author = {Kornsorn Srikulnath and Worapong Singchat and Nararat Laopichienpong and Syed Farhan Ahmad and Maryam Jehangir and Navapong Subpayakom and Aorarat Suntronpong and Kornsuang Jangtarwan and Tavun Pongsanarm and Thitipong Panthum and Nattakan Ariyaraphong and Jitlada Camcuan and Prateep Duengkae and Sahabhop Dokkaew and Narongrit Muangmai},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099913076&doi=10.1007%2fs13258-020-01027-2&partnerID=40&md5=efbc01fa20db1405a1aea9b4d18960c4},
doi = {10.1007/s13258-020-01027-2},
year = {2021},
date = {2021-01-01},
journal = {Genes and Genomics},
volume = {43},
number = {2},
pages = {91 – 104},
note = {Cited by: 10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Thintip, Jitmat; Singchat, Worapong; Ahmad, Syed Farhan; Ariyaraphong, Nattakan; Muangmai, Narongrit; Chamchumroon, Wiyada; Pitiwong, Klinsak; Suksavate, Warong; Duangjai, Sutee; Duengkae, Prateep; Srikulnath, Kornsorn
In: PLoS ONE, vol. 16, no. 8 August, 2021, (Cited by: 7; All Open Access, Gold Open Access, Green Open Access).
@article{Thintip2021c,
title = {Reduced genetic variability in a captive-bred population of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) revealed by microsatellite genotyping and Dloop sequencing},
author = {Jitmat Thintip and Worapong Singchat and Syed Farhan Ahmad and Nattakan Ariyaraphong and Narongrit Muangmai and Wiyada Chamchumroon and Klinsak Pitiwong and Warong Suksavate and Sutee Duangjai and Prateep Duengkae and Kornsorn Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85113905155&doi=10.1371%2fjournal.pone.0256573&partnerID=40&md5=272e0667916ad9b63cc0773597147fe5},
doi = {10.1371/journal.pone.0256573},
year = {2021},
date = {2021-01-01},
journal = {PLoS ONE},
volume = {16},
number = {8 August},
note = {Cited by: 7; All Open Access, Gold Open Access, Green Open Access},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
CONFERENCE ORGANIZATION
| 2023 |
Invited Speaker: the 35th Annual Meeting of the Thai Society for Biotechnology and International Conference (TSB2023) in Nakhon Ratchasima, Thailand on November 26-29, 2023 |
| 2023 |
Organizing committee: the 8th Asia-Pacific Chromosome Colloquium (APCC8) in the Tekirdag Namik Kemal University, Tekirdag, TURKEY on September 18-21, 2023 |
| 2023 |
Chair organizer: the 1st Animal Genomics and Bioresource for ESG & SDG Seminar in Bangkok, Thailand on March 13-15, 2023 |
| 2022 |
Invited Speaker: The 5th Rencontres de Quy Nhon: International Biology Conference 2022 in Quy Nhon, Vietnam on August 15 - 19, 2022. |
| 2022 |
Local-organizing committee: National Genetics Conference: NGC2022 in Bangkok, Thailand during June 1 – 2, 2022 |
| 2020 | Local-organizing committee (team leader): International Conference on Innovative Approaches in Applied Sciences and Technologies (iCiAsT- 2020) in Bangkok, Thailand during December 14 – 15, 2020 |
| 2019 | Chair organizer: The 3rd International Symposium & 2nd International Workshop on Functional Bio-Nanotechnology in Pattaya, Chonburi, Thailand during June 18 – 19, 2019 |
| 2019 | Local-organizing committee: National Genetics Conference: NGC2019 in Pattaya, Chonburi, Thailand during June 18 – 19, 2019 |
| 2018 | Local-organizing committee: 6th Asia-Pacific Chromosome Colloquium (APCC6): From Genomes to Chromosomes: Bridging the Gap in Canberra, Australia during July 4 – 5, 2018 |
| 2018 | Local-organizing committee: International Conference of Agriculture and Natural Resources (ANRES 2018) in Bangkok, Thailand during April 26 – 28, 2018 |
| 2017 | Local-organizing committee: Animal Genetic Improvement and Biotechnology Conference: Moving Towards Creative Economy in Bangkok, Thailand during July 13 – 14, 2017 |
| 2016 | Local-organizing committee (team leader): International Conference on Innovative Approaches in Applied Sciences and Technologies (iCiAsT- 2016) in Bangkok, Thailand during February 1 – 4, 2016 |
| 2015 | Secretary: The 5th Asian Chromosome Colloquium (New Horizon By Unifying of Chromosome Research) in Bangkok, Thailand during April 29 – May 1, 2015 |
| 2015 | Co-organizer: The 2nd UK-Japan chromosome structure workshop in Bangkok, Thailand during May 1, 2015 |
INTERNATIONAL COLLABORATORS
- Professor Yoichi Matsuda, Department of Applied Molecular Biosciences, Nagoya University, Japan - comparative genomics, sex chromosome evolution, and cytogenetics in Amniotes
- Professor Asato Kuroiwa, Laboratory of Animal Cytogenetics, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido, Japan - comparative genomics, sex chromosome evolution, and cytogenetics in birds and fishes
- Professor Jennifer Graves, School of Life Science, La Trobe University, Melbourne, VIC 3086, Australia - sex chromosomes and comparative genomics.
- Professor Tariq Ezaz, Faculty of Education Science Technology and Mathematics, Institute for Applied Ecology, University of Canberra, ACT 2616, Australia - comparative genomics and sex determination in amniotes
- Dr. Fengtang Yang, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK - comparative genomics, cytogenetics in Amniotes, and cancer biology
- Professor Darren Griffin, School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK - comparative genomics and cytogenetics in birds
- Associate Professor Kyudong Han, Department of Nanobiomedical Science, BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, 29 Anseo- Dong, Dongnam-Gu, Cheonan, Chungnam 330-714, Korea - comparative genomics in reptiles using NGS technology
- Professor Akihiko Koga, Primate Research Institute, Kyoto University, Inuyama 484-8506, Japan - comparative genomics and repetitive sequences in primates
- Professor Kiichi Fukui, Department of Biotechnology, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan – chromosome structure and proteomics
- Assistant Professor Hideaki Takata, Department of Biotechnology, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan – chromosome structure and proteomics
- Professor Nobuko Ohmido, Graduate School of Human Development and Environment, Kobe University, Japan – chromosome structure and proteomics
- Associate Professor Lukáš Kratochvíl, Department of Ecology, Faculty of Science, Charles University in Prague, Czech Republic – sex determination in reptiles
- Professor Ishwar Parhar, Brain Research Institute Monash Sunway (BRIMS), Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, 47500 Bandar Sunway, Selangor, Malaysia – genomics and histology
- Professor Dr. Suchinda Malaivijitnond, National Primate Research Center of Thailand, 254 Phayathai Road, Pathumwan, Bangkok 10330 Thailand – primatology
- Associate Professor Dr. Michael Gumert, School of Social Sciences, Nanyang Technological University, 48 Nanyang Ave, 639818 Singapore – behavior
- Dr. Yumiko Yamazaki, RIKEN Center for Biosystems Dynamics Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan– cognitive science
- Associate Professor Dr. Sunchai Payungporn, Department of Biochemistry, Faculty of Medicine, Chulalongkorn University, 254 Phayathai Road, Pathumwan, Bangkok 10330 Thailand– gut-microbiome
- Dr. Atsushi Iriki, RIKEN Center for Biosystems Dynamics Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan– physiology
- Dr. Narongrit Muangmai, Faculty of Fisheries, Kasetsart University, 50 Ngamwongwan Road, Ladyao, Chatuchuk, Bangkok– molecular evolution
- Dr. Prateep Duengkae, Department of Forest Biology, Faculty of Forestry, Kasetsart University, Jatujak, Bangkok, 10900 Thailand – wildlife biology
- Mr. Sarawut Wongphayak, Vishuo Biomedical (Thailand) Ltd., 17th Floor Alma Link Building, 25 Chitlom, Ploenchit, Lumphini, Pathumwan, Bangkok 10330 Thailand – bioinformatics
- Professor Dr. Yuzuru Hamada, Evolutionary Morphology Section, Primate Research Institute, Kyoto University, Inuyama, Aichi 484-8506, Japan – primate morphology
- Professor Dr. Yiming Bao, National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, NO.1 Beichen West Road, Chaoyang District, Beijing 100101, China – genomics