@article{Lisachov2023,

title = {Emerging importance of bighead catfish (Clarias macrocephalus) and north African catfish (C. gariepinus) as a bioresource and their genomic perspective},

author = {A. Lisachov and D. H. M. Nguyen and T. Panthum and S. F. Ahmad and W. Singchat and J. Ponjarat and K. Jaisamut and P. Srisapoome and P. Duengkae and S. Hatachote and K. Sriphairoj and N. Muangmai and S. Unajak and K. Han and U. Na-Nakorn and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85153387018&doi=10.1016%2fj.aquaculture.2023.739585&partnerID=40&md5=5a3ce76de1bee0fe3127e6eba8d05248},

doi = {10.1016/j.aquaculture.2023.739585},

issn = {00448486},

year  = {2023},

date = {2023-01-01},

journal = {Aquaculture},

volume = {573},

publisher = {Elsevier B.V.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Budi2023,

title = {Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds},

author = {T. Budi and W. Singchat and N. Tanglertpaibul and W. Wongloet and A. Chaiyes and N. Ariyaraphong and W. Thienpreecha and W. Wannakan and A. Mungmee and T. Thong and P. Wattanadilokchatkun and T. Panthum and S. F. Ahmad and A. Lisachov and N. Muangmai and R. Chuenka and P. Prapattong and M. Nunome and W. Chamchumroon and K. Han and S. Pornpipatsiri and T. Supnithi and M. -S. Peng and J. -L. Han and Y. Matsuda and P. Duengkae and P. Noinafai and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85156114135&doi=10.3390%2fsu15086878&partnerID=40&md5=a0f1eb8838b9ba2f331f76749a9c14e4},

doi = {10.3390/su15086878},

issn = {20711050},

year  = {2023},

date = {2023-01-01},

journal = {Sustainability (Switzerland)},

volume = {15},

number = {8},

publisher = {MDPI},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ariyaraphong2023,

title = {Should the Identification Guidelines for Siamese Crocodiles Be Revised? Differing Post-Occipital Scute Scale Numbers Show Phenotypic Variation Does Not Result from Hybridization with Saltwater Crocodiles},

author = {N. Ariyaraphong and W. Wongloet and P. Wattanadilokchatkun and T. Panthum and W. Singchat and T. Thong and A. Lisachov and S. F. Ahmad and N. Muangmai and K. Han and P. Duengkae and Y. Temsiripong and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85154033202&doi=10.3390%2fbiology12040535&partnerID=40&md5=992a447a9f4076e4e43e5bb5f56fba61},

doi = {10.3390/biology12040535},

issn = {20797737},

year  = {2023},

date = {2023-01-01},

journal = {Biology},

volume = {12},

number = {4},

publisher = {MDPI},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jeong2023,

title = {Effective microbial molecular diagnosis of periodontitis-related pathogen Porphyromonas gingivalis from salivary samples using rgpA gene},

author = {J. Jeong and Y. Oh and J. Jeon and D. -H. Baek and D. H. Kim and K. Srikulnath and K. Han},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85153603150&doi=10.5808%2fgi.22076&partnerID=40&md5=5f681058fe3ba2689c34d67903c68e47},

doi = {10.5808/gi.22076},

issn = {22340742},

year  = {2023},

date = {2023-01-01},

journal = {Genomics and Informatics},

volume = {21},

number = {1},

publisher = {Korea Genome Organization},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wongloet2023,

title = {Genetic Monitoring of the Last Captive Population of Greater Mouse-Deer on the Thai Mainland and Prediction of Habitat Suitability before Reintroduction},

author = {W. Wongloet and P. Kongthong and A. Chaiyes and W. Singchat and W. Suksavate and N. Ariyaraphong and T. Panthum and A. Lisachov and K. Jaisamut and J. Sonongbua and T. Budi and W. Wannakan and W. Thienpreecha and P. Paansri and S. F. Ahmad and K. Sribuarod and U. Prayoon and P. Aramsirirujiwet and W. Chamchumroon and N. Muangmai and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85149261233&doi=10.3390%2fsu15043112&partnerID=40&md5=3bf6e1a61599129ea2bfc299ff643fb5},

doi = {10.3390/su15043112},

issn = {20711050},

year  = {2023},

date = {2023-01-01},

journal = {Sustainability (Switzerland)},

volume = {15},

number = {4},

publisher = {MDPI},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Panthum2023169,

title = {Quality control of fighting fish nucleotide sequences in public repositories reveals a dark matter of systematic taxonomic implication},

author = {T. Panthum and N. Ariyaphong and P. Wattanadilokchatkun and W. Singchat and S. F. Ahmad and E. Kraichak and S. Dokkaew and N. Muangmai and K. Han and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85143889290&doi=10.1007%2fs13258-022-01353-7&partnerID=40&md5=fb08b2c6e08b2e7db474604a9790209e},

doi = {10.1007/s13258-022-01353-7},

issn = {19769571},

year  = {2023},

date = {2023-01-01},

journal = {Genes and Genomics},

volume = {45},

number = {2},

pages = {169-181},

publisher = {Genetics Society of Korea},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Srikulnath2023,

title = {Asian Elephant Evolutionary Relationships: New Perspectives from Mitochondrial D-Loop Haplotype Diversity},

author = {K. Srikulnath and N. Ariyaraphong and W. Singchat and T. Panthum and A. Lisachov and S. F. Ahmad and K. Han and N. Muangmai and P. Duengkae},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85146018440&doi=10.3390%2fsu15010720&partnerID=40&md5=d3d2223fd30351cd5e8a4043df88f799},

doi = {10.3390/su15010720},

issn = {20711050},

year  = {2023},

date = {2023-01-01},

journal = {Sustainability (Switzerland)},

volume = {15},

number = {1},

publisher = {MDPI},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chaiyes2022,

title = {Evidence of Genetic Connectivity among Lyle’s Flying Fox Populations in Thailand for Wildlife Management and One Health Framework},

author = {A. Chaiyes and N. Ariyaraphong and N. Sukgosa and K. Jangtarwan and S. F. Ahmad and N. Laopichienpong and W. Singchat and T. Panthum and S. Duangjai and N. Muangmai and S. Wacharapluesadee and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85137920388&doi=10.3390%2fsu141710791&partnerID=40&md5=d4897a533e5877e909547407efd72ccf},

doi = {10.3390/su141710791},

issn = {20711050},

year  = {2022},

date = {2022-01-01},

journal = {Sustainability (Switzerland)},

volume = {14},

number = {17},

publisher = {MDPI},

abstract = {Bats are important reservoir hosts of emerging viruses. Recent viral outbreaks and pandemics have resulted in an increased research focus on the genetic diversity, population structure, and distribution of bat species. Lyle’s flying fox (Pteropus lylei) is widely distributed throughout central Thailand, with most colonies congregating in temples within proximity to humans. A lack of knowledge regarding the genetic connectivity among different colonies hinders the investigation of zoonotic disease epidemiology and wildlife management. In this study, we hypothesized that genetic material may be exchanged between Lyle’s flying fox colonies that live in proximity. We assessed the mitochondrial displacement loop and cytochrome b nucleotide sequences of samples collected from 94 individuals from ten colonies across different roosting sites and detected limited genetic differentiation but increased nucleotide divergence within colonies. This suggests that genetic connectivity among Lyle’s flying fox colonies has experienced frequent and recent gene flow. These findings indicate that this species has maintained demographic equilibrium in a stable population, with a slight expansion event in certain populations. These data provide insights into the dynamics of bat populations, and the genetic knowledge gained presents opportunities for the improved monitoring of bat population structure. © 2022 by the authors.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Duengkae2022,

title = {Coincidence of low genetic diversity and increasing population size in wild gaur populations in the Khao Phaeng Ma Non- Hunting Area, Thailand: A challenge for conservation management under humanwildlife conflict},

author = {P. Duengkae and N. Ariyaraphong and W. Tipkantha and W. Jairak and S. Baicharoen and D. H. M. Nguyen and O. Korboon and W. Singchat and T. Panthum and S. F. Ahmad and E. Kaewkhunjob and C. Chaisonkhram and U. Maikaew and N. Muangmai and G. Ieamsaard and S. Sripiboon and P. Paansri and W. Suksavate and A. Chaiyes and S. Winitpornsawan and U. Prayoon and T. Sornsa and R. Chokcharoen and A. Buanual and B. Siriaroonrat and Y. Utara and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85137125631&doi=10.1371%2fjournal.pone.0273731&partnerID=40&md5=de7e0531452fda78ec82d7dded7c2cdc},

doi = {10.1371/journal.pone.0273731},

issn = {19326203},

year  = {2022},

date = {2022-01-01},

journal = {PLoS ONE},

volume = {17},

number = {8 August},

publisher = {Public Library of Science},

abstract = {The gaur (Bos gaurus) is found throughout mainland South and Southeast Asia but is listed as an endangered species in Thailand with a decreasing population size and a reduction in suitable habitat. While gaur have shown a population recovery from 35 to 300 individuals within 30 years in the Khao Phaeng Ma (KPM) Non-Hunting Area, this has caused conflict with villagers along the border of the protected area. At the same time, the ecotourism potential of watching gaurs has boosted the local economy. In this study, 13 mitochondrial displacement-loop sequence samples taken from gaur with GPS collars were analyzed. Three haplotypes identified in the population were defined by only two parsimony informative sites (from 9 mutational steps of nucleotide difference). One haplotype was shared among eleven individuals located in different subpopulations/herds, suggesting very low genetic diversity with few maternal lineages in the founder population. Based on the current small number of sequences, neutrality and demographic expansion test results also showed that the population was likely to contract in the near future. These findings provide insight into the genetic diversity and demography of the wild gaur population in the KPM protected area that can inform long-term sustainable management action plans. © 2022 Duengkae et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Singchat2022,

title = {Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long‐Tailed and Rhesus Macaques},

author = {W. Singchat and S. F. Ahmad and K. Jaisamut and T. Panthum and N. Ariyaraphong and E. Kraichak and N. Muangmai and P. Duengkae and S. Payungporn and S. Malaivijitnond and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85132688631&doi=10.3390%2fcells11121953&partnerID=40&md5=d6a9ece8ee3edc2be0b9381647654d2b},

doi = {10.3390/cells11121953},

issn = {20734409},

year  = {2022},

date = {2022-01-01},

journal = {Cells},

volume = {11},

number = {12},

publisher = {MDPI},

abstract = {The domestication of wild animals represents a major milestone for human civilization. Chicken is the largest domesticated livestock species and used for both eggs and meat. Chicken originate from the red junglefowl (Gallus gallus). Its adaptability to diverse environments and ease of selective breeding provides a unique genetic resource to address the challenges of food security in a world impacted by climatic change and human population growth. Habitat loss has caused population declines of red junglefowl in Thailand. However, genetic diversity is likely to remain in captive stocks. We determine the genetic diversity using microsatellite genotyping and the mitochondrial D-loop sequencing of wild red junglefowl. We identified potential distribution areas in Thailand using maximum entropy models. Protected areas in the central and upper southern regions of Thailand are highly suitable habitats. The Bayesian clustering analysis of the microsatellite markers revealed high genetic diversity in red junglefowl populations in Thailand. Our model predicted that forest ranges are a highly suitable habitat that has enabled the persistence of a large gene pool with a nationwide natural distribution. Understanding the red junglefowl allows us to implement improved resource management, species reintroduction, and sustainable development to support food security objectives for local people. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chetruengchai2022,

title = {Genome of Varanus salvator macromaculatus (Asian Water Monitor) Reveals Adaptations in the Blood Coagulation and Innate Immune System},

author = {W. Chetruengchai and W. Singchat and C. Srichomthong and A. Assawapitaksakul and K. Srikulnath and S. F. Ahmad and C. Phokaew and V. Shotelersuk},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85133423820&doi=10.3389%2ffevo.2022.850817&partnerID=40&md5=42706ef85618835f883f74b76c990948},

doi = {10.3389/fevo.2022.850817},

issn = {2296701X},

year  = {2022},

date = {2022-01-01},

journal = {Frontiers in Ecology and Evolution},

volume = {10},

publisher = {Frontiers Media S.A.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Singchat2022b,

title = {Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long‐Tailed and Rhesus Macaques},

author = {W. Singchat and S. F. Ahmad and K. Jaisamut and T. Panthum and N. Ariyaraphong and E. Kraichak and N. Muangmai and P. Duengkae and S. Payungporn and S. Malaivijitnond and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85132688631&doi=10.3390%2fcells11121953&partnerID=40&md5=d6a9ece8ee3edc2be0b9381647654d2b},

doi = {10.3390/cells11121953},

year  = {2022},

date = {2022-01-01},

journal = {Cells},

volume = {11},

number = {12},

abstract = {Centromeric satellite DNA (cen‐satDNA) consists of highly divergent repeat monomers, each approximately 171 base pairs in length. Here, we investigated the genetic diversity in the centromeric region of two primate species: long‐tailed (Macaca fascicularis) and rhesus (Macaca mulatta) macaques. Fluorescence in situ hybridization and bioinformatic analysis showed the chromosome‐specific organization and dynamic nature of cen‐satDNAsequences, and their substantial diversity, with distinct subfamilies across macaque populations, suggesting increased turnovers. Comparative genomics identified high level polymorphisms spanning a 120 bp deletion region and a remarkable interspecific variability in cen‐satDNA size and structure. Population structure analysis detected admixture patterns within populations, indicating their high divergence and rapid evolution. However, differences in censatDNA profiles appear to not be involved in hybrid incompatibility between the two species. Our study provides a genomic landscape of centromeric repeats in wild macaques and opens new avenues for exploring their impact on the adaptive evolution and speciation of primates. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chaiyes2022175,

title = {Mapping Risk of Nipah Virus Transmission from Bats to Humans in Thailand},

author = {A. Chaiyes and P. Duengkae and W. Suksavate and N. Pongpattananurak and S. Wacharapluesadee and K. J. Olival and K. Srikulnath and S. Pattanakiat and T. Hemachudha},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85131314375&doi=10.1007%2fs10393-022-01588-6&partnerID=40&md5=c229f9649d3576273f899b19d90d88d3},

doi = {10.1007/s10393-022-01588-6},

issn = {16129202},

year  = {2022},

date = {2022-01-01},

journal = {EcoHealth},

volume = {19},

number = {2},

pages = {175-189},

publisher = {Springer},

abstract = {Nipah virus (NiV) is a zoonotic virus that can pose a serious threat to human and livestock health. Old-world fruit bats (Pteropus spp.) are the natural reservoir hosts for NiV, and Pteropus lylei, Lyle’s flying fox, is an important host of NiV in mainland Southeast Asia. NiV can be transmitted from bats to humans directly via bat-contaminated foods (i.e., date palm sap or fruit) or indirectly via livestock or other intermediate animal hosts. Here we construct risk maps for NiV spillover and transmission by combining ecological niche models for the P. lylei bat reservoir with other spatial data related to direct or indirect NiV transmission (livestock density, foodborne sources including fruit production, and human population). We predict the current and future (2050 and 2070) distribution of P. lylei across Thailand, Cambodia, and Vietnam. Our best-fit model predicted that central and western regions of Thailand and small areas in Cambodia are currently the most suitable habitats for P. lylei. However, due to climate change, the species range is predicted to expand to include lower northern, northeastern, eastern, and upper southern Thailand and almost all of Cambodia and lower southern Vietnam. This expansion will create additional risk areas for human infection from P. lylei in Thailand. Our combined predictive risk maps showed that central Thailand, inhabited by 2.3 million people, is considered highly suitable for the zoonotic transmission of NiV from P. lylei. These current and future NiV transmission risk maps can be used to prioritize sites for active virus surveillance and developing awareness and prevention programs to reduce the risk of NiV spillover and spread in Thailand. © 2022, EcoHealth Alliance.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Panthum2022,

title = {Something Fishy about Siamese Fighting Fish (Betta splendens) Sex: Polygenic Sex Determination or a Newly Emerged Sex-Determining Region?},

author = {T. Panthum and K. Jaisamut and W. Singchat and S. F. Ahmad and L. Kongkaew and W. Wongloet and S. Dokkaew and E. Kraichak and N. Muangmai and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85131004974&doi=10.3390%2fcells11111764&partnerID=40&md5=02f594f19ba254389bd0182a92783922},

doi = {10.3390/cells11111764},

issn = {20734409},

year  = {2022},

date = {2022-01-01},

journal = {Cells},

volume = {11},

number = {11},

publisher = {MDPI},

abstract = {Fishes provide a unique and intriguing model system for studying the genomic origin and evolutionary mechanisms underlying sex determination and high sex-chromosome turnover. In this study, the mode of sex determination was investigated in Siamese fighting fish, a species of commercial importance. Genome-wide SNP analyses were performed on 75 individuals (40 males and 35 females) across commercial populations to determine candidate sex-specific/sex-linked loci. In total, 73 male-specific loci were identified and mapped to a 5.6 kb region on chromosome 9, sug-gesting a putative male-determining region (pMDR) containing localized dmrt1 and znrf3 functional sex developmental genes. Repeat annotations of the pMDR revealed an abundance of transposable elements, particularly Ty3/Gypsy and novel repeats. Remarkably, two out of the 73 male-specific loci were located on chromosomes 7 and 19, implying the existence of polygenic sex determination. Besides male-specific loci, five female-specific loci on chromosome 9 were also observed in certain populations, indicating the possibility of a female-determining region and the polygenic nature of sex determination. An alternative explanation is that male-specific loci derived from other chromosomes or female-specific loci in Siamese fighting fish recently emerged as new sex-determining loci during domestication and repeated hybridization. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 5},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ahmad2022357,

title = {Fish genomics and its impact on fundamental and applied research of vertebrate biology},

author = {S. F. Ahmad and M. Jehangir and K. Srikulnath and C. Martins},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85117932451&doi=10.1007%2fs11160-021-09691-7&partnerID=40&md5=492807addffb07deff2e43c180db67cd},

doi = {10.1007/s11160-021-09691-7},

issn = {09603166},

year  = {2022},

date = {2022-01-01},

journal = {Reviews in Fish Biology and Fisheries},

volume = {32},

number = {2},

pages = {357-385},

publisher = {Springer Science and Business Media Deutschland GmbH},

abstract = {The living fishes span a unique and interesting set of animals because of their vast diversity, morphology, ecology, genetics and genomics, and higher importance to biology, economy and culture. During the past decade, the remarkable increase in fish genome sequencing has revolutionized comparative and evolutionary genomics, with the outcome of stimulating insights into vertebrate genome biology. Fish genomics has been transformed rapidly, with the availability of high-quality chromosome level genome assemblies and large collections of sequencing datasets, which are roadmaps for striking discoveries. Landmark achievements are being made; such as the accomplishment of fully assembled lungfish genome which is biggest genome ever sequenced. Here, we highlight current developments in vertebrate’s comparative genomics and discuss how fish genomes could be considered as vital resources for genomic studies. We present a recent overview of genomics data, address different approaches applicable to comparative genomics analyses, and illustrate these comparisons to better understand the complex mechanisms under the vertebrate genomes. We also summarize the applications in chromosomes research and cytogenomics. Graphic abstract: [Figure not available: see fulltext.] © 2021, The Author(s), under exclusive licence to Springer Nature Switzerland AG.},

note = {cited By 3},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Srikulnath2022,

title = {Do Ty3/Gypsy Transposable Elements Play Preferential Roles in Sex Chromosome Differentiation?},

author = {K. Srikulnath and S. F. Ahmad and W. Singchat and T. Panthum},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85128361141&doi=10.3390%2flife12040522&partnerID=40&md5=2c2420707bd9c71eb590eaf4707a9cbe},

doi = {10.3390/life12040522},

issn = {20751729},

year  = {2022},

date = {2022-01-01},

journal = {Life},

volume = {12},

number = {4},

publisher = {MDPI},

abstract = {Transposable elements (TEs) comprise a substantial portion of eukaryotic genomes. They have the unique ability to integrate into new locations and serve as the main source of genomic novelties by mediating chromosomal rearrangements and regulating portions of functional genes. Recent studies have revealed that TEs are abundant in sex chromosomes. In this review, we propose evolutionary relationships between specific TEs, such as Ty3/Gypsy, and sex chromosomes in different lineages based on the hypothesis that these elements contributed to sex chromosome differentiation processes. We highlight how TEs can drive the dynamics of sex-determining regions via suppression recombination under a selective force to affect the organization and structural evolution of sex chromosomes. The abundance of TEs in the sex-determining regions originates from TE-poor genomic regions, suggesting a link between TE accumulation and the emergence of the sex-determining regions. TEs are generally considered to be a hallmark of chromosome degeneration. Finally, we outline recent approaches to identify TEs and study their sex-related roles and effects in the differentiation and evolution of sex chromosomes. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 3},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Suntronpong2022,

title = {Implications of genome-wide single nucleotide polymorphisms in jade perch (Scortum barcoo) reveals the putative XX/XY sex-determination system, facilitating a new chapter of sex control in aquaculture},

author = {A. Suntronpong and T. Panthum and N. Laopichienpong and D. H. M. Nguyen and E. Kraichak and W. Singchat and N. Ariyaraphong and S. F. Ahmad and N. Muangmai and P. Duengkae and S. Peyachoknagul and T. Ezaz and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85117398752&doi=10.1016%2fj.aquaculture.2021.737587&partnerID=40&md5=d8ceaa9e3927c765629f3b8e844c9509},

doi = {10.1016/j.aquaculture.2021.737587},

issn = {00448486},

year  = {2022},

date = {2022-01-01},

journal = {Aquaculture},

volume = {548},

publisher = {Elsevier B.V.},

abstract = {Jade perch (Scortum barcoo) is a new teleost in the developing aquaculture freshwater finfish grow-out sector in Australia and China. However, key information on the breeding sex determination system (SDS) remains poorly understood, hampering sex control programs and genetic improvement. In this study, the jade perch SDS was examined by investigating genome-wide single-nucleotide polymorphisms (SNPs) using diversity arrays technology and cytogenetics analysis to identify the genomic variants associated with sex-linked regions. Although the cytogenetic results showed no variation in the chromosomal patterns between males and females, one male-specific locus and 13 male-linked loci were observed, suggesting that jade perch exhibits male heterogametic XX/XY SDS. Male-specific loci on the putative Y sex chromosome were also identified as an extremely small proportion of the genome. A homology search of the SNP loci revealed the male-specific loci were homologous to the Gypsy transposable element. This might be a remnant of an initial accumulation of repeats on the Y chromosome at the early stage of sex chromosome differentiation. The results provide a base for sex control breeding biotechnologies and genetic improvements to promote sexual size dimorphism and other new approaches to improve the commercial value of jade perch. © 2021},

note = {cited By 3},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Nguyen2022,

title = {Genome-Wide SNP Analysis of Hybrid Clariid Fish Reflects the Existence of Polygenic Sex-Determination in the Lineage},

author = {D. H. M. Nguyen and J. Ponjarat and N. Laopichienpong and T. Panthum and W. Singchat and S. F. Ahmad and E. Kraichak and N. Muangmai and P. Duengkae and S. Peyachoknagul and U. Na-Nakorn and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85124894854&doi=10.3389%2ffgene.2022.789573&partnerID=40&md5=c78b59b7aeedf1a243e832ac3c27b858},

doi = {10.3389/fgene.2022.789573},

issn = {16648021},

year  = {2022},

date = {2022-01-01},

journal = {Frontiers in Genetics},

volume = {13},

publisher = {Frontiers Media S.A.},

abstract = {The African catfish (Clarias gariepinus) may exhibit the co-existence of XX/XY and ZZ/ZW sex-determination systems (SDSs). However, the SDS of African catfish might be influenced by a polygenic sex-determination (PSD) system, comprising multiple independently segregating sex “switch” loci to determine sex within a species. Here, we aimed to detect the existence of PSD using hybrid. The hybrid produced by crossing male African catfish with female bighead catfish (C. macrocephalus, XX/XY) is a good animal model to study SDSs. Determining the SDS of hybrid catfish can help in understanding the interactions between these two complex SDS systems. Using the genotyping-by-sequencing “DART-seq” approach, we detected seven moderately male-linked loci and seventeen female-linked loci across all the examined hybrid specimens. Most of these loci were not sex-linked in the parental species, suggesting that the hybrid exhibits a combination of different alleles. Annotation of the identified sex-linked loci revealed the presence of one female-linked locus homologous with the B4GALNT1 gene, which is involved in the spermatogenesis pathway and hatchability. However, this locus was not sex-linked in the parental species, and the African catfish might also exhibit PSD. Copyright © 2022 Nguyen, Ponjarat, Laopichienpong, Panthum, Singchat, Ahmad, Kraichak, Muangmai, Duengkae, Peyachoknagul, Na-Nakorn and Srikulnath.},

note = {cited By 4},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Srikulnath202262,

title = {Importance of Thai macaque bioresources for biological research and human health},

author = {K. Srikulnath and S. F. Ahmad and T. Panthum and S. Malaivijitnond},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85119506276&doi=10.1111%2fjmp.12555&partnerID=40&md5=6ef3dbc91f36a0d4cfcfcf8fe121723a},

doi = {10.1111/jmp.12555},

issn = {00472565},

year  = {2022},

date = {2022-01-01},

journal = {Journal of Medical Primatology},

volume = {51},

number = {1},

pages = {62-72},

publisher = {John Wiley and Sons Inc},

abstract = {During the past century, macaque bioresources have provided remarkable scientific and biomedical discoveries related to the understanding of human physiology, neuroanatomy, reproduction, development, cognition, and pathology. Considerable progress has been made, and an urgent need has arisen to develop infrastructure and viable settings to meet the current global demand in research models during the so-called new normal after COVID-19 era. This review highlights the critical need for macaque bioresources and proposes the establishment of a designated primate research center to integrate research in primate laboratories for the rescue and rehabilitation of wild macaques. Key areas where macaque models have been and continue to be essential for advancing fundamental knowledge in biomedical and biological research are outlined. Detailed genetic studies on macaque bioresources of Thai origin can further facilitate the rapid pace of vaccine discovery. © 2021 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Thapana2022,

title = {Concerted and Independent Evolution of Control Regions 1 and 2 of Water Monitor Lizards (Varanus salvator macromaculatus) and Different Phylogenetic Informative Markers},

author = {W. Thapana and N. Ariyaraphong and P. Wongtienchai and N. Laopichienpong and W. Singchat and T. Panthum and S. F. Ahmad and E. Kraichak and N. Muangmai and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85122374536&doi=10.3390%2fani12020148&partnerID=40&md5=c9e5f871f9cb9d95e422f73d0dc911c8},

doi = {10.3390/ani12020148},

issn = {20762615},

year  = {2022},

date = {2022-01-01},

journal = {Animals},

volume = {12},

number = {2},

publisher = {MDPI},

abstract = {Duplicate control regions (CRs) have been observed in the mitochondrial genomes (mitogenomes) of most varanids. Duplicate CRs have evolved in either concerted or independent evolution in vertebrates, but whether an evolutionary pattern exists in varanids remains unknown. Therefore, we conducted this study to analyze the evolutionary patterns and phylogenetic utilities of duplicate CRs in 72 individuals of Varanus salvator macromaculatus and other varanids. Sequence analyses and phylogenetic relationships revealed that divergence between orthologous copies from different individuals was lower than in paralogous copies from the same individual, suggesting an independent evolution of the two CRs. Distinct trees and recombination testing derived from CR1 and CR2 suggested that recombination events occurred between CRs during the evolutionary process. A comparison of substitution saturation showed the potential of CR2 as a phylogenetic marker. By contrast, duplicate CRs of the four examined varanids had similar sequences within species, suggesting typical characteristics of concerted evolution. The results provide a better understanding of the molecular evolutionary processes related to the mitogenomes of the varanid lineage. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 0},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ariyaraphong2022,

title = {Standard Identification Certificate for Legal Legislation of a Unique Gene Pool of Thai Domestic Elephants Originating from a Male Elephant Contribution to Breeding},

author = {N. Ariyaraphong and D. Ho My Nguyen and W. Singchat and W. Suksavate and T. Panthum and W. Langkaphin and S. Chansitthiwet and T. Angkawanish and A. Promking and K. Kaewtip and K. Jaisamut and S. F. Ahmad and S. Trirongjitmoah and N. Muangmai and O. Taesumrith and S. Inwiset and P. Duengkae and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85142685212&doi=10.3390%2fsu142215355&partnerID=40&md5=3b0a0870a4fce356c31b735dcbbbd1ec},

doi = {10.3390/su142215355},

issn = {20711050},

year  = {2022},

date = {2022-01-01},

journal = {Sustainability (Switzerland)},

volume = {14},

number = {22},

publisher = {MDPI},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wattanadilokchatkun2022,

title = {Characterization of Microsatellite Distribution in Siamese Fighting Fish Genome to Promote Conservation and Genetic Diversity},

author = {P. Wattanadilokchatkun and T. Panthum and K. Jaisamut and S. F. Ahmad and S. Dokkaew and N. Muangmai and P. Duengkae and W. Singchat and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85140613608&doi=10.3390%2ffishes7050251&partnerID=40&md5=1f13628dd05eb4bb0a5d9c10fc0da28b},

doi = {10.3390/fishes7050251},

issn = {24103888},

year  = {2022},

date = {2022-01-01},

journal = {Fishes},

volume = {7},

number = {5},

publisher = {MDPI},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Panthum2021,

title = {Genome-wide snp analysis of male and female rice field frogs, hoplobatrachus rugulosus, supports a non-genetic sex determination system},

author = {T. Panthum and W. Singchat and N. Laopichienpong and S. F. Ahmad and E. Kraichak and P. Duengkae and N. Muangmai and N. Kitana and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85118178291&doi=10.3390%2fd13100501&partnerID=40&md5=9d906b9b139a03f9200a85cf543220e5},

doi = {10.3390/d13100501},

issn = {14242818},

year  = {2021},

date = {2021-01-01},

journal = {Diversity},

volume = {13},

number = {10},

publisher = {MDPI},

abstract = {The snakeskin gourami (Trichopodus pectoralis) has a high meat yield and is one of the top five aquaculture freshwater fishes in Thailand. The species is not externally sexually dimorphic, and its sex determination system is unknown. Understanding the sex determination system of this species will contribute to its full-scale commercialization. In this study, a cytogenetic analysis did not reveal any between-sex differences in chromosomal patterns. However, we used genotyping-by-sequencing to identify 4 male-linked loci and 1 female-linked locus, indicating that the snakeskin gourami tends to exhibit an XX/XY sex determination system. However, we did not find any male-specific loci after filtering the loci for a ratio of 100:0 ratio of males:females. This suggests that the putative Y chromosome is young and that the sex determination region is cryptic. This approach provides solid information that can help identify the sex determination mechanism and potential sex determination regions in the snakeskin gourami, allowing further investigation of genetic improvements in the species. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hata2021,

title = {Origin and evolutionary history of domestic chickens inferred from a large population study of Thai red junglefowl and indigenous chickens},

author = {A. Hata and M. Nunome and T. Suwanasopee and P. Duengkae and S. Chaiwatana and W. Chamchumroon and T. Suzuki and S. Koonawootrittriron and Y. Matsuda and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099950448&doi=10.1038%2fs41598-021-81589-7&partnerID=40&md5=fabf7f20ad86e42ef8cba6adeb365ab9},

doi = {10.1038/s41598-021-81589-7},

issn = {20452322},

year  = {2021},

date = {2021-01-01},

journal = {Scientific Reports},

volume = {11},

number = {1},

publisher = {Nature Research},

abstract = {In this study, we aimed to elucidate the origin of domestic chickens and their evolutionary history over the course of their domestication. We conducted a large-scale genetic study using mitochondrial DNA D-loop sequences and 28 microsatellite DNA markers to investigate the diversity of 298 wild progenitor red junglefowl (Gallus gallus) across two subspecies (G. g. gallus and G. g. spadiceus) from 12 populations and 138 chickens from 10 chicken breeds indigenous to Thailand. Twenty-nine D-loop sequence haplotypes were newly identified: 14 and 17 for Thai indigenous chickens and red junglefowl, respectively. Bayesian clustering analysis with microsatellite markers also revealed high genetic diversity in the red junglefowl populations. These results suggest that the ancestral populations of Thai indigenous chickens were large, and that a part of the red junglefowl population gene pool was not involved in the domestication process. In addition, some haplogroups that are distributed in other countries of Southeast Asia were not observed in either the red junglefowls or the indigenous chickens examined in the present study, suggesting that chicken domestication occurred independently across multiple regions in Southeast Asia. © 2021, The Author(s).},

note = {cited By 21},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Singchat2021,

title = {Remnant of unrelated amniote sex chromosomal linkage sharing on the same chromosome in house gecko lizards, providing a better understanding of the ancestral super-sex chromosome},

author = {W. Singchat and T. Panthum and S. F. Ahmad and S. Baicharoen and N. Muangmai and P. Duengkae and D. K. Griffin and K. Srikulnath},

url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85118213200&doi=10.3390%2fcells10112969&partnerID=40&md5=89f78e39074fd3013099bddfb22d4da9},

doi = {10.3390/cells10112969},

issn = {20734409},

year  = {2021},

date = {2021-01-01},

journal = {Cells},

volume = {10},

number = {11},

publisher = {MDPI},

abstract = {Comparative chromosome maps investigating sex chromosomal linkage groups in amniotes and microsatellite repeat motifs of a male house gecko lizard (Hemidactylus frenatus, HFR) and a flat-tailed house gecko lizard (H. platyurus, HPL) of unknown sex were examined using 75 bacterial artificial chromosomes (BACs) from chicken and zebra finch genomes. No massive accumulations of microsatellite repeat motifs were found in either of the gecko lizards, but 10 out of 13 BACs mapped on HPL chromosomes were associated with other amniote sex chromosomes. Hybridization of the same BACs onto multiple different chromosome pairs suggested transitions to sex chromosomes across amniotes. No BAC hybridization signals were found on HFR chromosomes. However, HFR diverged from HPL about 30 million years ago, possibly due to intrachromosomal rearrangements occurring in the HFR lineage. By contrast, heterochromatin likely reshuffled patterns between HPL and HFR, as observed from C-positive heterochromatin distribution. Six out of ten BACs showed partial homology with squamate reptile chromosome 2 (SR2) and snake Z and/or W sex chromosomes. The gecko lizard showed shared unrelated sex chromosomal linkages—the remnants of a super-sex chromosome. A large ancestral super-sex chromosome showed a correlation between SR2 and snake W sex chromosomes. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},

note = {cited By 2},

keywords = {},

pubstate = {published},

tppubtype = {article}

}