Nattakan Ariyaraphong
M.Sc. Student in Genetics
+6693-493-0620
Career Objective
Biology graduate with Molecular and Cell biology, Cytogenetic, obtain a position relating to biology or cell culture.
Education
Bachelor of Science Major in Biology
Ubon Ratchathani University, Thailand2015-Present
Work Experience
Department of Biological Science, Faculty of Science Ubon Ratchathani UniversityJune-July 2018
- Chromosomes were directly prepared from bone marrow cells and stained by conventional staining and G-banding techniques.
- Study under microscope and chromosome analysis.
Extra-Curricular Activities
- Nurse Staff, UBU Freshy 2016, Ubon Ratchathani University
- Cheering Staff, The 43th Thailand University Games 2016, Ubon Ratchathani University
Skill
- English: Moderately
- Microsoft office : Word, Excel, Powerpoint
Publications
2023
Budi, T.; Singchat, W.; Tanglertpaibul, N.; Wongloet, W.; Chaiyes, A.; Ariyaraphong, N.; Thienpreecha, W.; Wannakan, W.; Mungmee, A.; Thong, T.; Wattanadilokchatkun, P.; Panthum, T.; Ahmad, S. F.; Lisachov, A.; Muangmai, N.; Chuenka, R.; Prapattong, P.; Nunome, M.; Chamchumroon, W.; Han, K.; Pornpipatsiri, S.; Supnithi, T.; Peng, M. -S.; Han, J. -L.; Matsuda, Y.; Duengkae, P.; Noinafai, P.; Srikulnath, K.
In: Sustainability (Switzerland), vol. 15, no. 8, 2023, ISSN: 20711050, (cited By 0).
@article{Budi2023,
title = {Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds},
author = {T. Budi and W. Singchat and N. Tanglertpaibul and W. Wongloet and A. Chaiyes and N. Ariyaraphong and W. Thienpreecha and W. Wannakan and A. Mungmee and T. Thong and P. Wattanadilokchatkun and T. Panthum and S. F. Ahmad and A. Lisachov and N. Muangmai and R. Chuenka and P. Prapattong and M. Nunome and W. Chamchumroon and K. Han and S. Pornpipatsiri and T. Supnithi and M. -S. Peng and J. -L. Han and Y. Matsuda and P. Duengkae and P. Noinafai and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85156114135&doi=10.3390%2fsu15086878&partnerID=40&md5=a0f1eb8838b9ba2f331f76749a9c14e4},
doi = {10.3390/su15086878},
issn = {20711050},
year = {2023},
date = {2023-01-01},
journal = {Sustainability (Switzerland)},
volume = {15},
number = {8},
publisher = {MDPI},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ariyaraphong, N.; Wongloet, W.; Wattanadilokchatkun, P.; Panthum, T.; Singchat, W.; Thong, T.; Lisachov, A.; Ahmad, S. F.; Muangmai, N.; Han, K.; Duengkae, P.; Temsiripong, Y.; Srikulnath, K.
In: Biology, vol. 12, no. 4, 2023, ISSN: 20797737, (cited By 0).
@article{Ariyaraphong2023,
title = {Should the Identification Guidelines for Siamese Crocodiles Be Revised? Differing Post-Occipital Scute Scale Numbers Show Phenotypic Variation Does Not Result from Hybridization with Saltwater Crocodiles},
author = {N. Ariyaraphong and W. Wongloet and P. Wattanadilokchatkun and T. Panthum and W. Singchat and T. Thong and A. Lisachov and S. F. Ahmad and N. Muangmai and K. Han and P. Duengkae and Y. Temsiripong and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85154033202&doi=10.3390%2fbiology12040535&partnerID=40&md5=992a447a9f4076e4e43e5bb5f56fba61},
doi = {10.3390/biology12040535},
issn = {20797737},
year = {2023},
date = {2023-01-01},
journal = {Biology},
volume = {12},
number = {4},
publisher = {MDPI},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wongloet, W.; Kongthong, P.; Chaiyes, A.; Singchat, W.; Suksavate, W.; Ariyaraphong, N.; Panthum, T.; Lisachov, A.; Jaisamut, K.; Sonongbua, J.; Budi, T.; Wannakan, W.; Thienpreecha, W.; Paansri, P.; Ahmad, S. F.; Sribuarod, K.; Prayoon, U.; Aramsirirujiwet, P.; Chamchumroon, W.; Muangmai, N.; Duengkae, P.; Srikulnath, K.
In: Sustainability (Switzerland), vol. 15, no. 4, 2023, ISSN: 20711050, (cited By 0).
@article{Wongloet2023,
title = {Genetic Monitoring of the Last Captive Population of Greater Mouse-Deer on the Thai Mainland and Prediction of Habitat Suitability before Reintroduction},
author = {W. Wongloet and P. Kongthong and A. Chaiyes and W. Singchat and W. Suksavate and N. Ariyaraphong and T. Panthum and A. Lisachov and K. Jaisamut and J. Sonongbua and T. Budi and W. Wannakan and W. Thienpreecha and P. Paansri and S. F. Ahmad and K. Sribuarod and U. Prayoon and P. Aramsirirujiwet and W. Chamchumroon and N. Muangmai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85149261233&doi=10.3390%2fsu15043112&partnerID=40&md5=3bf6e1a61599129ea2bfc299ff643fb5},
doi = {10.3390/su15043112},
issn = {20711050},
year = {2023},
date = {2023-01-01},
journal = {Sustainability (Switzerland)},
volume = {15},
number = {4},
publisher = {MDPI},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Srikulnath, K.; Ariyaraphong, N.; Singchat, W.; Panthum, T.; Lisachov, A.; Ahmad, S. F.; Han, K.; Muangmai, N.; Duengkae, P.
Asian Elephant Evolutionary Relationships: New Perspectives from Mitochondrial D-Loop Haplotype Diversity Journal Article
In: Sustainability (Switzerland), vol. 15, no. 1, 2023, ISSN: 20711050, (cited By 0).
@article{Srikulnath2023,
title = {Asian Elephant Evolutionary Relationships: New Perspectives from Mitochondrial D-Loop Haplotype Diversity},
author = {K. Srikulnath and N. Ariyaraphong and W. Singchat and T. Panthum and A. Lisachov and S. F. Ahmad and K. Han and N. Muangmai and P. Duengkae},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85146018440&doi=10.3390%2fsu15010720&partnerID=40&md5=d3d2223fd30351cd5e8a4043df88f799},
doi = {10.3390/su15010720},
issn = {20711050},
year = {2023},
date = {2023-01-01},
journal = {Sustainability (Switzerland)},
volume = {15},
number = {1},
publisher = {MDPI},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
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2022
Singchat, W.; Ahmad, S. F.; Jaisamut, K.; Panthum, T.; Ariyaraphong, N.; Kraichak, E.; Muangmai, N.; Duengkae, P.; Payungporn, S.; Malaivijitnond, S.; Srikulnath, K.
In: Cells, vol. 11, no. 12, 2022, (cited By 0).
@article{Singchat2022b,
title = {Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long‐Tailed and Rhesus Macaques},
author = {W. Singchat and S. F. Ahmad and K. Jaisamut and T. Panthum and N. Ariyaraphong and E. Kraichak and N. Muangmai and P. Duengkae and S. Payungporn and S. Malaivijitnond and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85132688631&doi=10.3390%2fcells11121953&partnerID=40&md5=d6a9ece8ee3edc2be0b9381647654d2b},
doi = {10.3390/cells11121953},
year = {2022},
date = {2022-01-01},
journal = {Cells},
volume = {11},
number = {12},
abstract = {Centromeric satellite DNA (cen‐satDNA) consists of highly divergent repeat monomers, each approximately 171 base pairs in length. Here, we investigated the genetic diversity in the centromeric region of two primate species: long‐tailed (Macaca fascicularis) and rhesus (Macaca mulatta) macaques. Fluorescence in situ hybridization and bioinformatic analysis showed the chromosome‐specific organization and dynamic nature of cen‐satDNAsequences, and their substantial diversity, with distinct subfamilies across macaque populations, suggesting increased turnovers. Comparative genomics identified high level polymorphisms spanning a 120 bp deletion region and a remarkable interspecific variability in cen‐satDNA size and structure. Population structure analysis detected admixture patterns within populations, indicating their high divergence and rapid evolution. However, differences in censatDNA profiles appear to not be involved in hybrid incompatibility between the two species. Our study provides a genomic landscape of centromeric repeats in wild macaques and opens new avenues for exploring their impact on the adaptive evolution and speciation of primates. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Centromeric satellite DNA (cen‐satDNA) consists of highly divergent repeat monomers, each approximately 171 base pairs in length. Here, we investigated the genetic diversity in the centromeric region of two primate species: long‐tailed (Macaca fascicularis) and rhesus (Macaca mulatta) macaques. Fluorescence in situ hybridization and bioinformatic analysis showed the chromosome‐specific organization and dynamic nature of cen‐satDNAsequences, and their substantial diversity, with distinct subfamilies across macaque populations, suggesting increased turnovers. Comparative genomics identified high level polymorphisms spanning a 120 bp deletion region and a remarkable interspecific variability in cen‐satDNA size and structure. Population structure analysis detected admixture patterns within populations, indicating their high divergence and rapid evolution. However, differences in censatDNA profiles appear to not be involved in hybrid incompatibility between the two species. Our study provides a genomic landscape of centromeric repeats in wild macaques and opens new avenues for exploring their impact on the adaptive evolution and speciation of primates. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Ariyaraphong, N.; Nguyen, D. Ho My; Singchat, W.; Suksavate, W.; Panthum, T.; Langkaphin, W.; Chansitthiwet, S.; Angkawanish, T.; Promking, A.; Kaewtip, K.; Jaisamut, K.; Ahmad, S. F.; Trirongjitmoah, S.; Muangmai, N.; Taesumrith, O.; Inwiset, S.; Duengkae, P.; Srikulnath, K.
In: Sustainability (Switzerland), vol. 14, no. 22, 2022, ISSN: 20711050, (cited By 1).
@article{Ariyaraphong2022,
title = {Standard Identification Certificate for Legal Legislation of a Unique Gene Pool of Thai Domestic Elephants Originating from a Male Elephant Contribution to Breeding},
author = {N. Ariyaraphong and D. Ho My Nguyen and W. Singchat and W. Suksavate and T. Panthum and W. Langkaphin and S. Chansitthiwet and T. Angkawanish and A. Promking and K. Kaewtip and K. Jaisamut and S. F. Ahmad and S. Trirongjitmoah and N. Muangmai and O. Taesumrith and S. Inwiset and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85142685212&doi=10.3390%2fsu142215355&partnerID=40&md5=3b0a0870a4fce356c31b735dcbbbd1ec},
doi = {10.3390/su142215355},
issn = {20711050},
year = {2022},
date = {2022-01-01},
journal = {Sustainability (Switzerland)},
volume = {14},
number = {22},
publisher = {MDPI},
note = {cited By 1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Chaiyes, A.; Ariyaraphong, N.; Sukgosa, N.; Jangtarwan, K.; Ahmad, S. F.; Laopichienpong, N.; Singchat, W.; Panthum, T.; Duangjai, S.; Muangmai, N.; Wacharapluesadee, S.; Duengkae, P.; Srikulnath, K.
Evidence of Genetic Connectivity among Lyle’s Flying Fox Populations in Thailand for Wildlife Management and One Health Framework Journal Article
In: Sustainability (Switzerland), vol. 14, no. 17, 2022, ISSN: 20711050, (cited By 0).
@article{Chaiyes2022,
title = {Evidence of Genetic Connectivity among Lyle’s Flying Fox Populations in Thailand for Wildlife Management and One Health Framework},
author = {A. Chaiyes and N. Ariyaraphong and N. Sukgosa and K. Jangtarwan and S. F. Ahmad and N. Laopichienpong and W. Singchat and T. Panthum and S. Duangjai and N. Muangmai and S. Wacharapluesadee and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85137920388&doi=10.3390%2fsu141710791&partnerID=40&md5=d4897a533e5877e909547407efd72ccf},
doi = {10.3390/su141710791},
issn = {20711050},
year = {2022},
date = {2022-01-01},
journal = {Sustainability (Switzerland)},
volume = {14},
number = {17},
publisher = {MDPI},
abstract = {Bats are important reservoir hosts of emerging viruses. Recent viral outbreaks and pandemics have resulted in an increased research focus on the genetic diversity, population structure, and distribution of bat species. Lyle’s flying fox (Pteropus lylei) is widely distributed throughout central Thailand, with most colonies congregating in temples within proximity to humans. A lack of knowledge regarding the genetic connectivity among different colonies hinders the investigation of zoonotic disease epidemiology and wildlife management. In this study, we hypothesized that genetic material may be exchanged between Lyle’s flying fox colonies that live in proximity. We assessed the mitochondrial displacement loop and cytochrome b nucleotide sequences of samples collected from 94 individuals from ten colonies across different roosting sites and detected limited genetic differentiation but increased nucleotide divergence within colonies. This suggests that genetic connectivity among Lyle’s flying fox colonies has experienced frequent and recent gene flow. These findings indicate that this species has maintained demographic equilibrium in a stable population, with a slight expansion event in certain populations. These data provide insights into the dynamics of bat populations, and the genetic knowledge gained presents opportunities for the improved monitoring of bat population structure. © 2022 by the authors.},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bats are important reservoir hosts of emerging viruses. Recent viral outbreaks and pandemics have resulted in an increased research focus on the genetic diversity, population structure, and distribution of bat species. Lyle’s flying fox (Pteropus lylei) is widely distributed throughout central Thailand, with most colonies congregating in temples within proximity to humans. A lack of knowledge regarding the genetic connectivity among different colonies hinders the investigation of zoonotic disease epidemiology and wildlife management. In this study, we hypothesized that genetic material may be exchanged between Lyle’s flying fox colonies that live in proximity. We assessed the mitochondrial displacement loop and cytochrome b nucleotide sequences of samples collected from 94 individuals from ten colonies across different roosting sites and detected limited genetic differentiation but increased nucleotide divergence within colonies. This suggests that genetic connectivity among Lyle’s flying fox colonies has experienced frequent and recent gene flow. These findings indicate that this species has maintained demographic equilibrium in a stable population, with a slight expansion event in certain populations. These data provide insights into the dynamics of bat populations, and the genetic knowledge gained presents opportunities for the improved monitoring of bat population structure. © 2022 by the authors.
Duengkae, P.; Ariyaraphong, N.; Tipkantha, W.; Jairak, W.; Baicharoen, S.; Nguyen, D. H. M.; Korboon, O.; Singchat, W.; Panthum, T.; Ahmad, S. F.; Kaewkhunjob, E.; Chaisonkhram, C.; Maikaew, U.; Muangmai, N.; Ieamsaard, G.; Sripiboon, S.; Paansri, P.; Suksavate, W.; Chaiyes, A.; Winitpornsawan, S.; Prayoon, U.; Sornsa, T.; Chokcharoen, R.; Buanual, A.; Siriaroonrat, B.; Utara, Y.; Srikulnath, K.
In: PLoS ONE, vol. 17, no. 8 August, 2022, ISSN: 19326203, (cited By 1).
@article{Duengkae2022,
title = {Coincidence of low genetic diversity and increasing population size in wild gaur populations in the Khao Phaeng Ma Non- Hunting Area, Thailand: A challenge for conservation management under humanwildlife conflict},
author = {P. Duengkae and N. Ariyaraphong and W. Tipkantha and W. Jairak and S. Baicharoen and D. H. M. Nguyen and O. Korboon and W. Singchat and T. Panthum and S. F. Ahmad and E. Kaewkhunjob and C. Chaisonkhram and U. Maikaew and N. Muangmai and G. Ieamsaard and S. Sripiboon and P. Paansri and W. Suksavate and A. Chaiyes and S. Winitpornsawan and U. Prayoon and T. Sornsa and R. Chokcharoen and A. Buanual and B. Siriaroonrat and Y. Utara and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85137125631&doi=10.1371%2fjournal.pone.0273731&partnerID=40&md5=de7e0531452fda78ec82d7dded7c2cdc},
doi = {10.1371/journal.pone.0273731},
issn = {19326203},
year = {2022},
date = {2022-01-01},
journal = {PLoS ONE},
volume = {17},
number = {8 August},
publisher = {Public Library of Science},
abstract = {The gaur (Bos gaurus) is found throughout mainland South and Southeast Asia but is listed as an endangered species in Thailand with a decreasing population size and a reduction in suitable habitat. While gaur have shown a population recovery from 35 to 300 individuals within 30 years in the Khao Phaeng Ma (KPM) Non-Hunting Area, this has caused conflict with villagers along the border of the protected area. At the same time, the ecotourism potential of watching gaurs has boosted the local economy. In this study, 13 mitochondrial displacement-loop sequence samples taken from gaur with GPS collars were analyzed. Three haplotypes identified in the population were defined by only two parsimony informative sites (from 9 mutational steps of nucleotide difference). One haplotype was shared among eleven individuals located in different subpopulations/herds, suggesting very low genetic diversity with few maternal lineages in the founder population. Based on the current small number of sequences, neutrality and demographic expansion test results also showed that the population was likely to contract in the near future. These findings provide insight into the genetic diversity and demography of the wild gaur population in the KPM protected area that can inform long-term sustainable management action plans. © 2022 Duengkae et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.},
note = {cited By 1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The gaur (Bos gaurus) is found throughout mainland South and Southeast Asia but is listed as an endangered species in Thailand with a decreasing population size and a reduction in suitable habitat. While gaur have shown a population recovery from 35 to 300 individuals within 30 years in the Khao Phaeng Ma (KPM) Non-Hunting Area, this has caused conflict with villagers along the border of the protected area. At the same time, the ecotourism potential of watching gaurs has boosted the local economy. In this study, 13 mitochondrial displacement-loop sequence samples taken from gaur with GPS collars were analyzed. Three haplotypes identified in the population were defined by only two parsimony informative sites (from 9 mutational steps of nucleotide difference). One haplotype was shared among eleven individuals located in different subpopulations/herds, suggesting very low genetic diversity with few maternal lineages in the founder population. Based on the current small number of sequences, neutrality and demographic expansion test results also showed that the population was likely to contract in the near future. These findings provide insight into the genetic diversity and demography of the wild gaur population in the KPM protected area that can inform long-term sustainable management action plans. © 2022 Duengkae et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Singchat, W.; Ahmad, S. F.; Jaisamut, K.; Panthum, T.; Ariyaraphong, N.; Kraichak, E.; Muangmai, N.; Duengkae, P.; Payungporn, S.; Malaivijitnond, S.; Srikulnath, K.
In: Cells, vol. 11, no. 12, 2022, ISSN: 20734409, (cited By 1).
@article{Singchat2022,
title = {Population Scale Analysis of Centromeric Satellite DNA Reveals Highly Dynamic Evolutionary Patterns and Genomic Organization in Long‐Tailed and Rhesus Macaques},
author = {W. Singchat and S. F. Ahmad and K. Jaisamut and T. Panthum and N. Ariyaraphong and E. Kraichak and N. Muangmai and P. Duengkae and S. Payungporn and S. Malaivijitnond and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85132688631&doi=10.3390%2fcells11121953&partnerID=40&md5=d6a9ece8ee3edc2be0b9381647654d2b},
doi = {10.3390/cells11121953},
issn = {20734409},
year = {2022},
date = {2022-01-01},
journal = {Cells},
volume = {11},
number = {12},
publisher = {MDPI},
abstract = {The domestication of wild animals represents a major milestone for human civilization. Chicken is the largest domesticated livestock species and used for both eggs and meat. Chicken originate from the red junglefowl (Gallus gallus). Its adaptability to diverse environments and ease of selective breeding provides a unique genetic resource to address the challenges of food security in a world impacted by climatic change and human population growth. Habitat loss has caused population declines of red junglefowl in Thailand. However, genetic diversity is likely to remain in captive stocks. We determine the genetic diversity using microsatellite genotyping and the mitochondrial D-loop sequencing of wild red junglefowl. We identified potential distribution areas in Thailand using maximum entropy models. Protected areas in the central and upper southern regions of Thailand are highly suitable habitats. The Bayesian clustering analysis of the microsatellite markers revealed high genetic diversity in red junglefowl populations in Thailand. Our model predicted that forest ranges are a highly suitable habitat that has enabled the persistence of a large gene pool with a nationwide natural distribution. Understanding the red junglefowl allows us to implement improved resource management, species reintroduction, and sustainable development to support food security objectives for local people. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The domestication of wild animals represents a major milestone for human civilization. Chicken is the largest domesticated livestock species and used for both eggs and meat. Chicken originate from the red junglefowl (Gallus gallus). Its adaptability to diverse environments and ease of selective breeding provides a unique genetic resource to address the challenges of food security in a world impacted by climatic change and human population growth. Habitat loss has caused population declines of red junglefowl in Thailand. However, genetic diversity is likely to remain in captive stocks. We determine the genetic diversity using microsatellite genotyping and the mitochondrial D-loop sequencing of wild red junglefowl. We identified potential distribution areas in Thailand using maximum entropy models. Protected areas in the central and upper southern regions of Thailand are highly suitable habitats. The Bayesian clustering analysis of the microsatellite markers revealed high genetic diversity in red junglefowl populations in Thailand. Our model predicted that forest ranges are a highly suitable habitat that has enabled the persistence of a large gene pool with a nationwide natural distribution. Understanding the red junglefowl allows us to implement improved resource management, species reintroduction, and sustainable development to support food security objectives for local people. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
Suntronpong, A.; Panthum, T.; Laopichienpong, N.; Nguyen, D. H. M.; Kraichak, E.; Singchat, W.; Ariyaraphong, N.; Ahmad, S. F.; Muangmai, N.; Duengkae, P.; Peyachoknagul, S.; Ezaz, T.; Srikulnath, K.
In: Aquaculture, vol. 548, 2022, ISSN: 00448486, (cited By 3).
@article{Suntronpong2022,
title = {Implications of genome-wide single nucleotide polymorphisms in jade perch (Scortum barcoo) reveals the putative XX/XY sex-determination system, facilitating a new chapter of sex control in aquaculture},
author = {A. Suntronpong and T. Panthum and N. Laopichienpong and D. H. M. Nguyen and E. Kraichak and W. Singchat and N. Ariyaraphong and S. F. Ahmad and N. Muangmai and P. Duengkae and S. Peyachoknagul and T. Ezaz and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85117398752&doi=10.1016%2fj.aquaculture.2021.737587&partnerID=40&md5=d8ceaa9e3927c765629f3b8e844c9509},
doi = {10.1016/j.aquaculture.2021.737587},
issn = {00448486},
year = {2022},
date = {2022-01-01},
journal = {Aquaculture},
volume = {548},
publisher = {Elsevier B.V.},
abstract = {Jade perch (Scortum barcoo) is a new teleost in the developing aquaculture freshwater finfish grow-out sector in Australia and China. However, key information on the breeding sex determination system (SDS) remains poorly understood, hampering sex control programs and genetic improvement. In this study, the jade perch SDS was examined by investigating genome-wide single-nucleotide polymorphisms (SNPs) using diversity arrays technology and cytogenetics analysis to identify the genomic variants associated with sex-linked regions. Although the cytogenetic results showed no variation in the chromosomal patterns between males and females, one male-specific locus and 13 male-linked loci were observed, suggesting that jade perch exhibits male heterogametic XX/XY SDS. Male-specific loci on the putative Y sex chromosome were also identified as an extremely small proportion of the genome. A homology search of the SNP loci revealed the male-specific loci were homologous to the Gypsy transposable element. This might be a remnant of an initial accumulation of repeats on the Y chromosome at the early stage of sex chromosome differentiation. The results provide a base for sex control breeding biotechnologies and genetic improvements to promote sexual size dimorphism and other new approaches to improve the commercial value of jade perch. © 2021},
note = {cited By 3},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Jade perch (Scortum barcoo) is a new teleost in the developing aquaculture freshwater finfish grow-out sector in Australia and China. However, key information on the breeding sex determination system (SDS) remains poorly understood, hampering sex control programs and genetic improvement. In this study, the jade perch SDS was examined by investigating genome-wide single-nucleotide polymorphisms (SNPs) using diversity arrays technology and cytogenetics analysis to identify the genomic variants associated with sex-linked regions. Although the cytogenetic results showed no variation in the chromosomal patterns between males and females, one male-specific locus and 13 male-linked loci were observed, suggesting that jade perch exhibits male heterogametic XX/XY SDS. Male-specific loci on the putative Y sex chromosome were also identified as an extremely small proportion of the genome. A homology search of the SNP loci revealed the male-specific loci were homologous to the Gypsy transposable element. This might be a remnant of an initial accumulation of repeats on the Y chromosome at the early stage of sex chromosome differentiation. The results provide a base for sex control breeding biotechnologies and genetic improvements to promote sexual size dimorphism and other new approaches to improve the commercial value of jade perch. © 2021
Thapana, W.; Ariyaraphong, N.; Wongtienchai, P.; Laopichienpong, N.; Singchat, W.; Panthum, T.; Ahmad, S. F.; Kraichak, E.; Muangmai, N.; Duengkae, P.; Srikulnath, K.
In: Animals, vol. 12, no. 2, 2022, ISSN: 20762615, (cited By 0).
@article{Thapana2022,
title = {Concerted and Independent Evolution of Control Regions 1 and 2 of Water Monitor Lizards (Varanus salvator macromaculatus) and Different Phylogenetic Informative Markers},
author = {W. Thapana and N. Ariyaraphong and P. Wongtienchai and N. Laopichienpong and W. Singchat and T. Panthum and S. F. Ahmad and E. Kraichak and N. Muangmai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85122374536&doi=10.3390%2fani12020148&partnerID=40&md5=c9e5f871f9cb9d95e422f73d0dc911c8},
doi = {10.3390/ani12020148},
issn = {20762615},
year = {2022},
date = {2022-01-01},
journal = {Animals},
volume = {12},
number = {2},
publisher = {MDPI},
abstract = {Duplicate control regions (CRs) have been observed in the mitochondrial genomes (mitogenomes) of most varanids. Duplicate CRs have evolved in either concerted or independent evolution in vertebrates, but whether an evolutionary pattern exists in varanids remains unknown. Therefore, we conducted this study to analyze the evolutionary patterns and phylogenetic utilities of duplicate CRs in 72 individuals of Varanus salvator macromaculatus and other varanids. Sequence analyses and phylogenetic relationships revealed that divergence between orthologous copies from different individuals was lower than in paralogous copies from the same individual, suggesting an independent evolution of the two CRs. Distinct trees and recombination testing derived from CR1 and CR2 suggested that recombination events occurred between CRs during the evolutionary process. A comparison of substitution saturation showed the potential of CR2 as a phylogenetic marker. By contrast, duplicate CRs of the four examined varanids had similar sequences within species, suggesting typical characteristics of concerted evolution. The results provide a better understanding of the molecular evolutionary processes related to the mitogenomes of the varanid lineage. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Duplicate control regions (CRs) have been observed in the mitochondrial genomes (mitogenomes) of most varanids. Duplicate CRs have evolved in either concerted or independent evolution in vertebrates, but whether an evolutionary pattern exists in varanids remains unknown. Therefore, we conducted this study to analyze the evolutionary patterns and phylogenetic utilities of duplicate CRs in 72 individuals of Varanus salvator macromaculatus and other varanids. Sequence analyses and phylogenetic relationships revealed that divergence between orthologous copies from different individuals was lower than in paralogous copies from the same individual, suggesting an independent evolution of the two CRs. Distinct trees and recombination testing derived from CR1 and CR2 suggested that recombination events occurred between CRs during the evolutionary process. A comparison of substitution saturation showed the potential of CR2 as a phylogenetic marker. By contrast, duplicate CRs of the four examined varanids had similar sequences within species, suggesting typical characteristics of concerted evolution. The results provide a better understanding of the molecular evolutionary processes related to the mitogenomes of the varanid lineage. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.
2021
Ariyaraphong, N.; Laopichienpong, N.; Singchat, W.; Panthum, T.; Ahmad, S. F.; Jattawa, D.; Duengkae, P.; Muangmai, N.; Suwanasopee, T.; Koonawootrittriron, S.; Srikulnath, K.
High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing Journal Article
In: Animals, vol. 11, no. 6, 2021, (cited By 5).
@article{Ariyaraphong2021b,
title = {High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing},
author = {N. Ariyaraphong and N. Laopichienpong and W. Singchat and T. Panthum and S. F. Ahmad and D. Jattawa and P. Duengkae and N. Muangmai and T. Suwanasopee and S. Koonawootrittriron and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107209977&doi=10.3390%2fani11061680&partnerID=40&md5=768fbcc498091ca40fd667bc46b56cc4},
doi = {10.3390/ani11061680},
year = {2021},
date = {2021-01-01},
journal = {Animals},
volume = {11},
number = {6},
abstract = {Domestication and artificial selection lead to the development of genetically divergent cattle breeds or hybrids that exhibit specific patterns of genetic diversity and population structure. Recently developed mitochondrial markers have allowed investigation of cattle diversity worldwide; however, an extensive study on the population-level genetic diversity and demography of dairy cattle in Thailand is still needed. Mitochondrial D-loop sequences were obtained from 179 individuals (hybrids of Bos taurus and B. indicus) sampled from nine different provinces. Fifty-one haplotypes, of which most were classified in haplogroup “I”, were found across all nine populations. All sampled populations showed severely reduced degrees of genetic differentiation, and low nucleotide diversity was observed in populations from central Thailand. Populations that originated from adjacent geographical areas tended to show high gene flow, as revealed by patterns of weak network structuring. Mismatch distribution analysis was suggestive of a stable population, with the recent occurrence of a slight expansion event. The results provide insights into the origins and the genetic relationships among local Thai cattle breeds and will be useful for guiding management of cattle breeding in Thailand. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.},
note = {cited By 5},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Domestication and artificial selection lead to the development of genetically divergent cattle breeds or hybrids that exhibit specific patterns of genetic diversity and population structure. Recently developed mitochondrial markers have allowed investigation of cattle diversity worldwide; however, an extensive study on the population-level genetic diversity and demography of dairy cattle in Thailand is still needed. Mitochondrial D-loop sequences were obtained from 179 individuals (hybrids of Bos taurus and B. indicus) sampled from nine different provinces. Fifty-one haplotypes, of which most were classified in haplogroup “I”, were found across all nine populations. All sampled populations showed severely reduced degrees of genetic differentiation, and low nucleotide diversity was observed in populations from central Thailand. Populations that originated from adjacent geographical areas tended to show high gene flow, as revealed by patterns of weak network structuring. Mismatch distribution analysis was suggestive of a stable population, with the recent occurrence of a slight expansion event. The results provide insights into the origins and the genetic relationships among local Thai cattle breeds and will be useful for guiding management of cattle breeding in Thailand. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
Thintip, J.; Singchat, W.; Ahmad, S. F.; Ariyaraphong, N.; Muangmai, N.; Chamchumroon, W.; Pitiwong, K.; Suksavate, W.; Duangjai, S.; Duengkae, P.; Srikulnath, K.
In: PLoS ONE, vol. 16, no. 8 August, 2021, ISSN: 19326203, (cited By 6).
@article{Thintip2021,
title = {Reduced genetic variability in a captive-bred population of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) revealed by microsatellite genotyping and Dloop sequencing},
author = {J. Thintip and W. Singchat and S. F. Ahmad and N. Ariyaraphong and N. Muangmai and W. Chamchumroon and K. Pitiwong and W. Suksavate and S. Duangjai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85113905155&doi=10.1371%2fjournal.pone.0256573&partnerID=40&md5=272e0667916ad9b63cc0773597147fe5},
doi = {10.1371/journal.pone.0256573},
issn = {19326203},
year = {2021},
date = {2021-01-01},
journal = {PLoS ONE},
volume = {16},
number = {8 August},
publisher = {Public Library of Science},
abstract = {Captive breeding programs are crucial to ensure the survival of endangered species and ultimately to reintroduce individuals into the wild. However, captive-bred populations can also deteriorate due to inbreeding depression and reduction of genetic variability. We genotyped a captive population of 82 individuals of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) at the Doi Tung Wildlife Breeding Center to assess the genetic consequences associated with captive breeding. Analysis of microsatellite loci and mitochondrial D-loop sequences reveal significantly reduced genetic differentiation and a shallow population structure. Despite the low genetic variability, no bottleneck was observed but 12 microsatellite loci were informative in reflecting probable inbreeding. These findings provide a valuable source of knowledge to maximize genetic variability and enhance the success of future conservation plans for captive and wild populations of Hume's pheasant. © 2021 Thintip et al.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.},
note = {cited By 6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Captive breeding programs are crucial to ensure the survival of endangered species and ultimately to reintroduce individuals into the wild. However, captive-bred populations can also deteriorate due to inbreeding depression and reduction of genetic variability. We genotyped a captive population of 82 individuals of the endangered Hume's pheasant (Syrmaticus humiae, Hume 1881) at the Doi Tung Wildlife Breeding Center to assess the genetic consequences associated with captive breeding. Analysis of microsatellite loci and mitochondrial D-loop sequences reveal significantly reduced genetic differentiation and a shallow population structure. Despite the low genetic variability, no bottleneck was observed but 12 microsatellite loci were informative in reflecting probable inbreeding. These findings provide a valuable source of knowledge to maximize genetic variability and enhance the success of future conservation plans for captive and wild populations of Hume's pheasant. © 2021 Thintip et al.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Ariyaraphong, N.; Laopichienpong, N.; Singchat, W.; Panthum, T.; Ahmad, S. F.; Jattawa, D.; Duengkae, P.; Muangmai, N.; Suwanasopee, T.; Koonawootrittriron, S.; Srikulnath, K.
High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing Journal Article
In: Animals, vol. 11, no. 6, 2021, ISSN: 20762615, (cited By 6).
@article{Ariyaraphong2021,
title = {High-level gene flow restricts genetic differentiation in dairy cattle populations in thailand: Insights from large-scale mt d-loop sequencing},
author = {N. Ariyaraphong and N. Laopichienpong and W. Singchat and T. Panthum and S. F. Ahmad and D. Jattawa and P. Duengkae and N. Muangmai and T. Suwanasopee and S. Koonawootrittriron and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85107209977&doi=10.3390%2fani11061680&partnerID=40&md5=768fbcc498091ca40fd667bc46b56cc4},
doi = {10.3390/ani11061680},
issn = {20762615},
year = {2021},
date = {2021-01-01},
journal = {Animals},
volume = {11},
number = {6},
publisher = {MDPI AG},
abstract = {The Chinese goral (Naemorhedus griseus) is a small goat-like animal, which is considered “vulnerable” due to its rapid decline in population in the wild. Captive breeding programs are necessary to prevent the extinction of Chinese gorals; however, reproduction in captivity reduces genetic diversity due to inbreeding. In 2020, a total of six wild Chinese gorals were introduced into a captive population of 73 individuals to improve the allelic gene pool. An assessment of captive gorals was conducted to trace and understand genetic diversity in the new captive state. Microsatellite genotyping and mitochondrial D-loop sequence analyses were performed to examine the genetic diversity and population structure. The results showed very low haplotype diversity, with a significant difference between He (0.477 ± 0.065) and Ho (0.196 ± 0.056), suggesting a high degree of inbreeding. This resulted in a limited ability to adapt to environmental change and low natural reproductive fitness, thus increasing the risk of population decline and eventual extinction. Management of captive breeding plans based on different subpopulations and haplotypes has been proposed to maximize genetic variability and enhance the success of future conservation plans. © 2021 The Authors},
note = {cited By 6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The Chinese goral (Naemorhedus griseus) is a small goat-like animal, which is considered “vulnerable” due to its rapid decline in population in the wild. Captive breeding programs are necessary to prevent the extinction of Chinese gorals; however, reproduction in captivity reduces genetic diversity due to inbreeding. In 2020, a total of six wild Chinese gorals were introduced into a captive population of 73 individuals to improve the allelic gene pool. An assessment of captive gorals was conducted to trace and understand genetic diversity in the new captive state. Microsatellite genotyping and mitochondrial D-loop sequence analyses were performed to examine the genetic diversity and population structure. The results showed very low haplotype diversity, with a significant difference between He (0.477 ± 0.065) and Ho (0.196 ± 0.056), suggesting a high degree of inbreeding. This resulted in a limited ability to adapt to environmental change and low natural reproductive fitness, thus increasing the risk of population decline and eventual extinction. Management of captive breeding plans based on different subpopulations and haplotypes has been proposed to maximize genetic variability and enhance the success of future conservation plans. © 2021 The Authors
Srikulnath, K.; Singchat, W.; Laopichienpong, N.; Ahmad, S. F.; Jehangir, M.; Subpayakom, N.; Suntronpong, A.; Jangtarwan, K.; Pongsanarm, T.; Panthum, T.; Ariyaraphong, N.; Camcuan, J.; Duengkae, P.; Dokkaew, S.; Muangmai, N.
Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans Journal Article
In: Genes and Genomics, vol. 43, no. 2, pp. 91-104, 2021, ISSN: 19769571, (cited By 7).
@article{Srikulnath202191,
title = {Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans},
author = {K. Srikulnath and W. Singchat and N. Laopichienpong and S. F. Ahmad and M. Jehangir and N. Subpayakom and A. Suntronpong and K. Jangtarwan and T. Pongsanarm and T. Panthum and N. Ariyaraphong and J. Camcuan and P. Duengkae and S. Dokkaew and N. Muangmai},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85099913076&doi=10.1007%2fs13258-020-01027-2&partnerID=40&md5=efbc01fa20db1405a1aea9b4d18960c4},
doi = {10.1007/s13258-020-01027-2},
issn = {19769571},
year = {2021},
date = {2021-01-01},
journal = {Genes and Genomics},
volume = {43},
number = {2},
pages = {91-104},
publisher = {Genetics Society of Korea},
abstract = {Background: The Siamese fighting fish (Betta splendens, also known as the betta) is well known in aquarium markets, and also presents an exciting new research model for studying parental care, aggressive behavior, and cryptically diverse pigmentation. However, concentrated efforts are required, both in the context of conservation biology and in its genetics, to address the problems of ongoing outbreeding depression, loss of biodiversity, and lack of scientific biological information. Objective: The evolutionary dynamics of the betta must be better understood at the genomic scale in order to resolve the phylogenetic status of unrecognized species, develop molecular markers to study variation in traits, and identify interesting sets of genes encoding various bioresource functions. Methods: The recent revolution in multi-omics approaches such as genomics, transcriptomics, epigenomics, and proteomics has uncovered genetic diversity and gained insights into many aspects of betta bioresources. Results: Here, we present current research and future plans in an ongoing megaproject to characterize the betta genome as de novo assemblies, genes and repeat annotations, generating data to study diverse biological phenomena. We highlight key questions that require answers and propose new directions and recommendations to develop bioresource management to protect and enhance the betta genus. Conclusion: Successful accomplishment of these plans will allow the creation of a reference annotated genome and provide valuable information at the molecular level that can be utilized to sustain biodiversity and eco-management of the betta to improve breeding programs for future biomedical research. © 2021, The Genetics Society of Korea.},
note = {cited By 7},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Background: The Siamese fighting fish (Betta splendens, also known as the betta) is well known in aquarium markets, and also presents an exciting new research model for studying parental care, aggressive behavior, and cryptically diverse pigmentation. However, concentrated efforts are required, both in the context of conservation biology and in its genetics, to address the problems of ongoing outbreeding depression, loss of biodiversity, and lack of scientific biological information. Objective: The evolutionary dynamics of the betta must be better understood at the genomic scale in order to resolve the phylogenetic status of unrecognized species, develop molecular markers to study variation in traits, and identify interesting sets of genes encoding various bioresource functions. Methods: The recent revolution in multi-omics approaches such as genomics, transcriptomics, epigenomics, and proteomics has uncovered genetic diversity and gained insights into many aspects of betta bioresources. Results: Here, we present current research and future plans in an ongoing megaproject to characterize the betta genome as de novo assemblies, genes and repeat annotations, generating data to study diverse biological phenomena. We highlight key questions that require answers and propose new directions and recommendations to develop bioresource management to protect and enhance the betta genus. Conclusion: Successful accomplishment of these plans will allow the creation of a reference annotated genome and provide valuable information at the molecular level that can be utilized to sustain biodiversity and eco-management of the betta to improve breeding programs for future biomedical research. © 2021, The Genetics Society of Korea.
Thintip, J.; Ahmad, S. F.; Singchat, W.; Laopichienpong, N.; Suntronpong, A.; Panthum, T.; Nguyen, D. Ho My; Ariyaraphong, N.; Muangmai, N.; Suksawet, W.; Duengkae, P.; Srikulnath, K.
Mitochondrial genome of bronze-winged jacana (Metopidius indicus, Latham 1790) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 6, no. 8, pp. 2251-2253, 2021, ISSN: 23802359, (cited By 0).
@article{Thintip20212251,
title = {Mitochondrial genome of bronze-winged jacana (Metopidius indicus, Latham 1790)},
author = {J. Thintip and S. F. Ahmad and W. Singchat and N. Laopichienpong and A. Suntronpong and T. Panthum and D. Ho My Nguyen and N. Ariyaraphong and N. Muangmai and W. Suksawet and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85111835903&doi=10.1080%2f23802359.2021.1945971&partnerID=40&md5=9bf711f19dab14a22253dc0f1c2d0a2f},
doi = {10.1080/23802359.2021.1945971},
issn = {23802359},
year = {2021},
date = {2021-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {6},
number = {8},
pages = {2251-2253},
publisher = {Taylor and Francis Ltd.},
abstract = {We reported the mitochondrial genome (mitogenome) of bronze-winged jacana (Metopidius indicus, Latham 1790). The circular mitogenome was 17,208 base pairs (bp) in length, containing 13 protein-coding genes, two rRNAs, 22 tRNAs, and a non-coding control region. A DNA spacer 109 bp long was also detected between ND5 and Cytb. Phylogenetic analysis indicated that M. indicus was more closely related with the genera Himantopus, Jacana and Hydrophasianus. This annotated mitogenome reference can be utilized as a data resource for comparative mitogenomics of waders or shorebirds, with possible use in ecological and evolutionary studies. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {cited By 0},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
We reported the mitochondrial genome (mitogenome) of bronze-winged jacana (Metopidius indicus, Latham 1790). The circular mitogenome was 17,208 base pairs (bp) in length, containing 13 protein-coding genes, two rRNAs, 22 tRNAs, and a non-coding control region. A DNA spacer 109 bp long was also detected between ND5 and Cytb. Phylogenetic analysis indicated that M. indicus was more closely related with the genera Himantopus, Jacana and Hydrophasianus. This annotated mitogenome reference can be utilized as a data resource for comparative mitogenomics of waders or shorebirds, with possible use in ecological and evolutionary studies. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Laopichienpong, N.; Ahmad, S. F.; Singchat, W.; Suntronpong, A.; Pongsanarm, T.; Jangtarwan, K.; Bulan, J.; Pansrikaew, T.; Panthum, T.; Ariyaraphong, N.; Subpayakom, N.; Dokkaew, S.; Muangmai, N.; Duengkae, P.; Srikulnath, K.
Complete mitochondrial genome of Mekong fighting fish, Betta smaragdina (Teleostei: Osphronemidae) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 6, no. 3, pp. 776-778, 2021, ISSN: 23802359, (cited By 2).
@article{Laopichienpong2021776,
title = {Complete mitochondrial genome of Mekong fighting fish, Betta smaragdina (Teleostei: Osphronemidae)},
author = {N. Laopichienpong and S. F. Ahmad and W. Singchat and A. Suntronpong and T. Pongsanarm and K. Jangtarwan and J. Bulan and T. Pansrikaew and T. Panthum and N. Ariyaraphong and N. Subpayakom and S. Dokkaew and N. Muangmai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85102445931&doi=10.1080%2f23802359.2021.1882893&partnerID=40&md5=b5c619487b002a671672981925640346},
doi = {10.1080/23802359.2021.1882893},
issn = {23802359},
year = {2021},
date = {2021-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {6},
number = {3},
pages = {776-778},
publisher = {Taylor and Francis Ltd.},
abstract = {Mekong fighting fish (Betta smaragdina) are found in Northeast Thailand. A complete mitochondrial genome (mitogenome) of B. smaragdina was assembled and annotated. Mitogenome sequences were 16,372 bp in length, with slight AT bias (59.8%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. smaragdina showed closer relationship with B. splendens and B. mahachaiensis as the bubble-nesting group, compared to the mouthbrooder group (B. apollon, B. simplex, and B. pi). Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of betta bioresources to improve conservation programs. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {cited By 2},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mekong fighting fish (Betta smaragdina) are found in Northeast Thailand. A complete mitochondrial genome (mitogenome) of B. smaragdina was assembled and annotated. Mitogenome sequences were 16,372 bp in length, with slight AT bias (59.8%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. smaragdina showed closer relationship with B. splendens and B. mahachaiensis as the bubble-nesting group, compared to the mouthbrooder group (B. apollon, B. simplex, and B. pi). Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of betta bioresources to improve conservation programs. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
2020
Singchat, W.; Ahmad, S. F.; Laopichienpong, N.; Suntronpong, A.; Pongsanarm, T.; Panthum, T.; Ariyaraphong, N.; Subpayakom, N.; Dokkaew, S.; Muangmai, N.; Duengkae, P.; Srikulnath, K.
Complete mitochondrial genome of Mahachai betta, Betta mahachaiensis (Teleostei: Osphronemidae) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 5, no. 3, pp. 3077-3079, 2020, ISSN: 23802359, (cited By 6).
@article{Singchat20203077,
title = {Complete mitochondrial genome of Mahachai betta, Betta mahachaiensis (Teleostei: Osphronemidae)},
author = {W. Singchat and S. F. Ahmad and N. Laopichienpong and A. Suntronpong and T. Pongsanarm and T. Panthum and N. Ariyaraphong and N. Subpayakom and S. Dokkaew and N. Muangmai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85089070058&doi=10.1080%2f23802359.2020.1797578&partnerID=40&md5=55da5604acdccc42e8b89b58f07be85b},
doi = {10.1080/23802359.2020.1797578},
issn = {23802359},
year = {2020},
date = {2020-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {5},
number = {3},
pages = {3077-3079},
publisher = {Taylor and Francis Ltd.},
abstract = {Mahachai bettas (Betta mahachaiensis) are distributed in areas of brackish water with Nipa Palms in Samut Sakhon, Thailand but urbanization is restricting their biodiversity. A complete mitochondrial genome (mitogenome) of B. mahachaiensis was determined to support conservation programs. Mitogenome sequences were 16,980 bp in length with slight AT bias (61.91%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. mahachaiensis showed a closer relationship with B. splendens. Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of the betta to improve conservation programs. © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {cited By 6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mahachai bettas (Betta mahachaiensis) are distributed in areas of brackish water with Nipa Palms in Samut Sakhon, Thailand but urbanization is restricting their biodiversity. A complete mitochondrial genome (mitogenome) of B. mahachaiensis was determined to support conservation programs. Mitogenome sequences were 16,980 bp in length with slight AT bias (61.91%), containing 37 genes with identical order to most teleost mitogenomes. Phylogenetic analysis of B. mahachaiensis showed a closer relationship with B. splendens. Results will allow the creation of a reference annotated genome that can be utilized to sustain biodiversity and eco-management of the betta to improve conservation programs. © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Ahmad, S. F.; Laopichienpong, N.; Singchat, W.; Suntronpong, A.; Pongsanarm, T.; Panthum, T.; Ariyaraphong, N.; Bulan, J.; Pansrikaew, T.; Jangtarwan, K.; Subpayakom, N.; Dokkaew, S.; Muangmai, N.; Duengkae, P.; Srikulnath, K.
Next-generation sequencing yields complete mitochondrial genome assembly of peaceful betta fish, Betta imbellis (Teleostei: Osphronemidae) Journal Article
In: Mitochondrial DNA Part B: Resources, vol. 5, no. 4, pp. 3856-3858, 2020, ISSN: 23802359, (cited By 5).
@article{Ahmad20203856,
title = {Next-generation sequencing yields complete mitochondrial genome assembly of peaceful betta fish, Betta imbellis (Teleostei: Osphronemidae)},
author = {S. F. Ahmad and N. Laopichienpong and W. Singchat and A. Suntronpong and T. Pongsanarm and T. Panthum and N. Ariyaraphong and J. Bulan and T. Pansrikaew and K. Jangtarwan and N. Subpayakom and S. Dokkaew and N. Muangmai and P. Duengkae and K. Srikulnath},
url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85097991831&doi=10.1080%2f23802359.2020.1841582&partnerID=40&md5=06b7011c7216ed2aa20e9e54c2ec2e82},
doi = {10.1080/23802359.2020.1841582},
issn = {23802359},
year = {2020},
date = {2020-01-01},
journal = {Mitochondrial DNA Part B: Resources},
volume = {5},
number = {4},
pages = {3856-3858},
publisher = {Taylor and Francis Ltd.},
abstract = {The complete mitochondrial genome (mitogenome) of the peaceful betta (Betta imbellis) was obtained using next-generation sequencing. The sample of B. imbellis was collected from its native habitat in Southern Thailand. The mitogenome sequence was 16,897 bp in length, containing 37 genes with identical order to most teleost mitogenomes. Overall nucleotide base composition of the complete mitogenome was determined as AT bias. Phylogenetic analysis of B. imbellis showed a closer relationship with bubble-nesting fighting fish. This annotated mitogenome reference can be utilized as a bioresource for phylogenetic studies to support betta conservation programs. © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.},
note = {cited By 5},
keywords = {},
pubstate = {published},
tppubtype = {article}
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The complete mitochondrial genome (mitogenome) of the peaceful betta (Betta imbellis) was obtained using next-generation sequencing. The sample of B. imbellis was collected from its native habitat in Southern Thailand. The mitogenome sequence was 16,897 bp in length, containing 37 genes with identical order to most teleost mitogenomes. Overall nucleotide base composition of the complete mitogenome was determined as AT bias. Phylogenetic analysis of B. imbellis showed a closer relationship with bubble-nesting fighting fish. This annotated mitogenome reference can be utilized as a bioresource for phylogenetic studies to support betta conservation programs. © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.